Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq47 123 5e-23 seq94 111 3e-19 >seq47 Length=5048387 Score = 123 bits (136), Expect = 5e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | || || | || || ||||| || | ||||| || || || ||| Sbjct 1632668 ATACCACCACGGAGTCGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCA 1632727 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| |||||| |||| ||||| || || ||||||||||| | | |||||||||||| Sbjct 1632728 GATAGTGTTCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGA 1632787 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || || || ||| || || || | || | ||| Sbjct 1632788 GGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCA 1632847 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| || |||||||| || ||||| || || || | ||| ||||||||||| Sbjct 1632848 ACTTCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 1632900 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | || || | || || ||||| || | ||||| || || || ||| Sbjct 1632440 ATACCACCACGGAGTCGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCA 1632499 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| |||||| |||| ||||| || || ||||||||||| | | |||||||||||| Sbjct 1632500 GATAGTGTTCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGA 1632559 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || || || ||| || || || | || | ||| Sbjct 1632560 GGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCA 1632619 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || |||||||| || ||||| || || || | ||| |||||||| Sbjct 1632620 ACTTCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632669 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | ||||| | || || ||||| || | ||||| || || || |||||| Sbjct 1632215 CCACCACGGAGACGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGAT 1632274 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | |||||| |||| ||||| || || ||||||||||| | | |||||||||||| || Sbjct 1632275 AGTGTTCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGA 1632334 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || |||||||| || || || || ||| || || || | || | ||| ||| Sbjct 1632335 ATGCCTTCTTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACT 1632394 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || |||||||| || ||||| || || || | ||| |||||||| Sbjct 1632395 TCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632441 >seq94 Length=3237593 Score = 111 bits (122), Expect = 3e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| ||||| | || | ||| | ||| | |||||| |||||| || || Sbjct 39465 ATACCCCCTCTCAGACGCAGCACCAGATGAAGAGTGGACTCTTTCTGGATATTGTAGTCT 39524 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || | || |||| ||||| ||||| ||||| | | |||||| || ||| Sbjct 39525 GACAGTGTGCGGCCTTCTTCCAGCTGTTTGCCAGCGAAGATCAGACGCTGTTGGTCGGGT 39584 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || || ||| || ||||| || | || | ||| Sbjct 39585 GGAATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCC 39644 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATT 192542 || || || ||||| || || ||||| | ||||| | ||| ||||||||||| || Sbjct 39645 ACCTCCAGTGTAATAGTCTTGCCAGTCAGGGTTTTCACAAAAATCTGCATTTTGTT 39700 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| ||||| | || | ||| | ||||| ||||| ||| || || || Sbjct 39009 ATGCCTCCTCTCAGACGCAGCACCAGATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCT 39068 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| || | ||||||||||||||||| | | ||| || || ||| Sbjct 39069 GACAGTGTGCGGCCATCCTCTAGCTGTTTACCAGCAAAGATCAGACGCTGCTGGTCGGGT 39128 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || || ||| || ||||| || | || | ||| Sbjct 39129 GGAATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGTTCC 39188 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || ||||| || || || || || || | ||| |||||||| Sbjct 39189 ACTTCCAGTGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 39238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984212540165400