Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1535 149 8e-30 seq201 105 8e-17 seq1451 104 3e-16 seq480 91.5 2e-12 >seq1535 Length=14141 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||||||||||||||| | | | || Sbjct 8228 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 8169 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| ||||||| ||||||| |||| | Sbjct 8168 TGGTCGAGCGCTTGTTGTACTGCGCCAGGCGGGAAGCCTCGGACGCGATGCGCTCGAAGA 8109 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| || ||||| |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 8108 TGTCATTCACAAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCCGGGT 8049 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| | ||||||||| Sbjct 8048 GGACCTGCTTCATCACCTTGTA 8027 >seq201 Length=881128 Score = 105 bits (116), Expect = 8e-17 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || | | ||| | ||||||||||| ||||||||||| | | | || Sbjct 60978 GCTTGGCCAGCTCCCTGGGCAGCAGCAGGCGCACGGTGGTCTGGATCTTCCTGGAGGTGA 61037 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | || ||||| | | |||| || ||| ||| |||| | Sbjct 61038 TGGTCGAGCGCTTGTTGTACTGAGCCAGGCAGGAAGCCTTGGACGCGAAGCGCTCGAAGA 61097 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| || || | |||||||||| ||| | |||| |||||||| ||| |||| Sbjct 61098 TGTCATT--CACAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCTGGTGTCCGGGT 61155 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | |||||||| | ||||||||| ||| | | ||||| Sbjct 61156 GAACCTGCTTCATCACCTTGTACATGTAGAAGGAGTA 61192 >seq1451 Length=14805 Score = 104 bits (114), Expect = 3e-16 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| || || ||| | ||| || || || ||||||||||| |||| | || Sbjct 8245 GCTTGGCCAACTCCCCCGGCAGCAGCAGCCGGACCGCCGTCTGGATCTCCCGCGAGGAGA 8186 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || | |||||||| | || ||| ||| | |||| | |||||||||||| | Sbjct 8185 TGGTCTGCCGCTTGTTGTACTGGATCAGGCGGGAGCACTCGCAGGCGATGCGGTCGAAGA 8126 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||| || ||||| ||||| ||| | | | ||||||||| ||| |||| Sbjct 8125 CGTCGGTGATGAAGGAGTTGATGACGTTCATGGCCCGGGAGGAGATGCCGGTGTCCGGGT 8066 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 8065 GGACCTGCTTCAGCACCTTGTA 8044 >seq480 Length=88459 Score = 91.5 bits (100), Expect = 2e-12 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || ||| ||| | ||||| || ||||||| | ||| || | ||| ||| Sbjct 43941 GCCAGCTCCCCGGGCAGCAGTAGGCGGACAGCGGTCTTTACCTCACGGCTAGTGATTGTG 44000 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| | || || || | ||||||| || |||| || || | || ||| Sbjct 44001 CAGCGCTTGTTGTATTGGGCGAGGTGCAAGGCCTCGCTGGCGATCCGCTCAAACACATCG 44060 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || |||||||||||||||| ||||| ||| | ||||| || ||| ||||||||| Sbjct 44061 TTCACAAACGAGTTCATGATGCTCATCGCTTTGCTCGAGATTCCAGTGTCCGGGTGCACC 44120 Query 1254528 TGCTTGAGCA 1254537 || | || || Sbjct 44121 TGATAGATCA 44130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105399100461668