Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq94 143 2e-29 seq47 143 2e-29 >seq94 Length=3237593 Score = 143 bits (158), Expect = 2e-29 Identities = 174/231 (75%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || || || || ||||| ||| Sbjct 38554 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACACTTGAGGTAGAGCCCAGT 38495 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || | ||| ||||| ||||||||||| || || ||||| || Sbjct 38494 GACACCATTGAGAACGTGAAGGCCAAA-ATCCAGGACAAAGAAGGCATTCCCCCCGACCA 38436 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTAT 24880 || ||| |||||||||| || || |||||||||||| ||| | || |||| || || Sbjct 38435 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCG-CACAC-TGTCTGACTAC 38378 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||||| || || || ||||| ||||||||| |||| || | || ||| Sbjct 38377 AACATTCAGAAAGAGTCCACACTGCACTTGGTGCTGCGTCTGAGAGGGGGC 38327 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || || || || || || || || ||||| ||| ||| Sbjct 38782 ATGCAGATTTTTGTCAAAACCCTGACTGGCAAGACCATCACACTGGAAGTGGAACCCAGT 38723 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| |||||||| || || || ||||||||| Sbjct 38722 GACACCATTGAAAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATCCCACCCGATCAA 38663 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||||||||| || |||||||| ||| | | | | ||||| |||||| Sbjct 38662 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTATCAGACTATAAC 38603 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || || ||||| || || || |||| |||| Sbjct 38602 ATCCAGAAAGAATCCACTCTGCATCTGGTCCTGCG 38568 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | ||||| || || || || || ||||| ||| ||| Sbjct 39238 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACACTGGAAGTGGAACCCAGT 39179 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||||||||| || || ||||| || Sbjct 39178 GACACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCACCCGACCAG 39119 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||||||||| || |||||||| |||||| | | ||||||| || ||| Sbjct 39118 CAGCGTCTGATCTTTGCTGGTAAACAGCTAGAGGATGGCCGCACACTGTCAGACTACAAC 39059 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || ||||| || || || ||||| |||| || | |||||| Sbjct 39058 ATCCAGAAAGAATCTACTCTCCATCTGGTGCTGCGTCTGAGAGGAGGC 39011 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || || || || |||||||| || || || ||| ||| Sbjct 39694 ATGCAGATTTTTGTGAAAACCCTGACTGGCAAGACTATTACACTGGAGGTGGAACCCAGT 39635 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| ||||||||||| || || ||||| ||| Sbjct 39634 GACACCATTGAAAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCACCCGACCAA 39575 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| || || ||||||||||| || | | ||||||| || || Sbjct 39574 CAGCGTCTGATCTTCGCTGGCAAACAGCTGGAAGAAGGCCGCACACTGTCAGACTACAAT 39515 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || || || || || || || ||||| |||| Sbjct 39514 ATCCAGAAAGAGTCCACTCTTCATCTGGTGCTGCG 39480 Score = 116 bits (128), Expect = 3e-21 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || | || || || || || || | || || ||| ||| Sbjct 39010 ATGCAGATTTTTGTCAAGACCTTGACTGGCAAGACCATCACATTGGAGGTTGAACCCAGT 38951 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || || ||||| ||||| ||||| || || || ||||| Sbjct 38950 GACACCATTGAAAACGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 38891 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || ||| |||| ||||| || || ||||| || ||| ||| | || |||| || || | Sbjct 38890 CAGCGTCTGATTTTTGCTGGCAAGCAGCTTGAAGATGGTCGC-ACAC-TGTCTGACTACA 38833 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||| || |||||||| ||||| |||||||||||||| || | || ||| Sbjct 38832 ACATCCAGAAGGAATCCACACTGCACTTGGTGTTGCGTCTGAGAGGCGGC 38783 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || ||||| || || || || |||||| ||| Sbjct 39466 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAAACCATCACACTTGAGGTAGAACCCAGT 39407 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||| ||||| || || || || || |||||| Sbjct 39406 GACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAGGGTATCCCACCAGATCAA 39347 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| || || || ||||| || ||| | | | ||||| || ||| Sbjct 39346 CAGCGCCTGATCTTCGCTGGCAAGCAGCTAGAAGATGGCCGCACACTTTCAGACTACAAC 39287 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || || || || || || |||||| |||| | | |||||| Sbjct 39286 ATCCAGAAAGAGTCCACTCTCCATTTGGTGCTGCGTCTCAGAGGAGGC 39239 >seq47 Length=5048387 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || ||||| || ||||| ||| | | Sbjct 1632669 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACCAAGT 1632610 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||||||||| || ||||| |||||| Sbjct 1632609 GACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGATCAA 1632550 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || ||| |||| ||| ||| | || || || ||| Sbjct 1632549 CAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTATCTGACTACAAC 1632490 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || ||||| ||| ||||||||||| ||||| | || || || Sbjct 1632489 ATTCAGAAAGAATCCACATTACACTTGGTGCTGCGACTCCGTGGTGG 1632443 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || ||||| || ||||| ||| | | Sbjct 1632897 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACCAAGT 1632838 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||||||||| || ||||| |||||| Sbjct 1632837 GACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGATCAA 1632778 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || ||| |||| ||| ||| | || || || ||| Sbjct 1632777 CAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTATCTGACTACAAC 1632718 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || ||||| ||| ||||||||||| ||||| | || || || Sbjct 1632717 ATTCAGAAAGAATCCACATTACACTTGGTGCTGCGACTCCGTGGTGG 1632671 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || ||||| || ||||| ||| | | Sbjct 1632441 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACCAAGT 1632382 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||||||||| || ||||| |||||| Sbjct 1632381 GACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGATCAA 1632322 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || ||| |||| ||| ||| | || || || ||| Sbjct 1632321 CAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTATCTGACTACAAC 1632262 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| || ||||| ||| ||||||||||| |||| Sbjct 1632261 ATTCAGAAAGAATCCACATTACACTTGGTGCTGCG 1632227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449778354641120