Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1535 210 3e-48 seq201 152 8e-31 seq480 149 1e-29 seq1451 141 1e-27 seq7 105 1e-16 >seq1535 Length=14141 Score = 210 bits (232), Expect = 3e-48 Identities = 195/245 (80%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 8267 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 8208 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||||||||||||||| | || | ||| || ||||||||| || | Sbjct 8207 GCAGCAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGATGGTCGAGCGCTTGTT-GTAC 8149 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 ||||||||||| ||||||| ||||||| |||| ||||| || ||||| |||||| Sbjct 8148 TGCGCCAGGCGGGAAGCCTCGGACGCGATGCGCTCGAAGATGTCATTCACAAAGGAGTTC 8089 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | ||| ||||||||| ||| ||||| |||||||| | ||||||| Sbjct 8088 ATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCCGGGTGGACCTGCTTCATCACCTTG 8029 Query 1485709 TAAAC 1485713 || || Sbjct 8028 TACAC 8024 >seq201 Length=881128 Score = 152 bits (168), Expect = 8e-31 Identities = 181/242 (75%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || | ||| ||| ||||||| || | | ||| Sbjct 60939 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACATGGCCTGCTTGGCCAGCTCCCTGGGCA 60998 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||||| ||||||||||| | || | ||| || ||||||||| || | Sbjct 60999 GCAGCAGGCGCACGGTGGTCTGGATCTTCCTGGAGGTGATGGTCGAGCGCTTGTT-GTAC 61057 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | ||||||| | |||| || ||| ||| |||| ||||| || || | |||||| Sbjct 61058 TGAGCCAGGCAGGAAGCCTTGGACGCGAAGCGCTCGAAGATGTCATT--CACAGGAGTTC 61115 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | ||| |||||||| ||| ||||| |||||||| | ||||||| Sbjct 61116 ATGATGCTCATGGCCTTGGAGGAGATGCTGGTGTCCGGGTGAACCTGCTTCATCACCTTG 61175 Query 1485709 TA 1485710 || Sbjct 61176 TA 61177 >seq480 Length=88459 Score = 149 bits (164), Expect = 1e-29 Identities = 175/235 (74%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| ||| |||| ||||| || ||||||||| | ||||| || ||| ||| Sbjct 43898 GTACTTGGTGACAGCCATGGTGCCCTCAGACACGGCGTGCTTAGCCAGCTCCCCGGGCAG 43957 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGTG 1485588 | ||||| || ||||||| | ||| ||| | ||| ||| |||||||| || || Sbjct 43958 CAGTAGGCGGACAGCGGTCTTTACCTCACGGCTAGTGATTGTGCAGCGCTTGTTGTATTG 44017 Query 1485589 CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 ||| ||| | ||||||| || |||| || || | || ||||| |||||||||||| Sbjct 44018 GGCG--AGGTGCAAGGCCTCGCTGGCGATCCGCTCAAACACATCGTTCACAAACGAGTTC 44075 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCA 1485703 ||||| ||||| |||| | ||||| || ||| ||||||||||| | || || Sbjct 44076 ATGATGCTCATCGCTTTGCTCGAGATTCCAGTGTCCGGGTGCACCTGATAGATCA 44130 >seq1451 Length=14805 Score = 141 bits (156), Expect = 1e-27 Identities = 180/245 (73%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||||||||| ||||| |||| ||||||| |||||| || || ||| Sbjct 8284 TGTACTTGGTCACGGCCTTGGTGCCCTCGGAGATGGCGTGCTTGGCCAACTCCCCCGGCA 8225 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| || || || ||||||||||| || | | ||| || | |||||||| || | Sbjct 8224 GCAGCAGCCGGACCGCCGTCTGGATCTCCCGCGAGGAGATGGTCTGCCGCTTGTT-GTAC 8166 Query 1485590 GCGC-CAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | ||||||| | |||| | |||||||||||| | |||| ||| || ||||| Sbjct 8165 TGGATCAGGCGGGAGCACTCGCAGGCGATGCGGTCGAAGACGTCGGTGATGAAGGAGTTG 8106 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||| ||| | | ||||||||| ||| ||||| |||||||| ||||||||| Sbjct 8105 ATGACGTTCATGGCCCGGGAGGAGATGCCGGTGTCCGGGTGGACCTGCTTCAGCACCTTG 8046 Query 1485709 TAAAC 1485713 || || Sbjct 8045 TACAC 8041 Score = 102 bits (112), Expect = 1e-15 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || ||||| ||||||||||| |||||| || ||| ||| Sbjct 13322 TGTACTTGGTGACGGCCTTCGTGCCCTCGGAGACGGCGTGTTTGGCCAACTCCCCGGGCA 13381 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCG 1485578 | |||||| |||||| |||||||||| |||| | ||| || | ||| Sbjct 13382 GCAGCAGGCGGACGGCGCTCTGGATCTCCCGGGAGGAGATGGTCTGGCG 13430 >seq7 Length=13485325 Score = 105 bits (116), Expect = 1e-16 Identities = 172/245 (70%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| |||| |||||| ||||| ||| |||||| ||||||| || ||| ||| Sbjct 4773776 TGTACTTGGTCACGGACTTGGTGCCCTCGGAGGTGGCGTGTTTGGCCAGCTCCCCGGGCA 4773717 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | || || | ||||||||| || | | ||| || | |||||||| || | Sbjct 4773716 GCAGAAGCCAGACTGCCGCCTGGATCTCCCGCGAGGAGATGGTCTGCCGCTTGTT-GTAC 4773658 Query 1485590 GCGC-CAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | || |||| | |||| | |||||| || || | |||| ||| || ||||| Sbjct 4773657 TGGATCAAGCGGGAGCACTCGCAGACGATGCAGTTGAAGACGTCGGTGATGAAGGAGTTG 4773598 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||| ||| | ||| ||||||| ||| ||||| || ||||| ||||||||| Sbjct 4773597 ATGACGTTCATGGCCTTGGACAAGATGCCGGTGTCCGGGTGGACATGCTTCAGCACCTTG 4773538 Query 1485709 TAAAC 1485713 || || Sbjct 4773537 TACAC 4773533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913990833808556