Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq94 132 3e-26 seq47 100 2e-16 >seq94 Length=3237593 Score = 132 bits (146), Expect = 3e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34747 ATTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTC 34806 ||| || || |||| | ||| |||| ||| | ||| ||| ||||||||||| ||||| Sbjct 38324 ATTGCCCCCTCTCAGACGCAGCACCAAGTGCAGTGTGGACTCTTTCTGAATGTTGTAGTC 38383 Query 34807 CGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTG 34866 || || |||| |||| ||||| ||||| || || |||||||| || |||||||| | Sbjct 38384 AGACAGTGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGG 38443 Query 34867 CGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTC 34926 || | || || ||||| | ||||| || ||| | || | ||| ||| ||| Sbjct 38444 GGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTC 38503 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||| || |||||||| || || |||||||| |||||||||||||| Sbjct 38504 TACCTCAAGTGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 38554 Score = 116 bits (128), Expect = 2e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||||||||| || | ||| || ||||| ||||||||||| |||||| | || |||| Sbjct 38570 CAGGACCAGATGCAGAGTGGATTCTTTCTGGATGTTATAGTCTGATAGGGTACGGCCATC 38629 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||| |||||||| || || || || | || | ||||| ||||| Sbjct 38630 TTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGTTGATCGGGTGGGATACCCTCTTTGTC 38689 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || ||||| | | || | ||| ||| || || || | || ||||| Sbjct 38690 CTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACTTCCAGTGTGATGGT 38749 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || || ||||| || ||||| ||||||||| Sbjct 38750 CTTGCCAGTCAGGGTTTTGACAAAAATCTGCATG 38783 Score = 114 bits (126), Expect = 8e-21 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| || | | ||| |||| || | ||| ||| ||||| ||||| ||||| || Sbjct 39240 CCTCCTCTGAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAA 39299 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| || || ||||| || ||||||||||| || || || ||| | || Sbjct 39300 AGTGTGCGGCCATCTTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCTGGTGGG 39359 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||||||||| | ||||| || || || || || | ||| ||| || | Sbjct 39360 ATACCCTCCTTGTCCTGGATTTTGGCCTTCAC--ATTCTCAATGGTGTCACTGGGTTCTA 39417 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| || ||||| || || || |||||||| |||||||||||||| Sbjct 39418 CCTCAAGTGTGATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 39466 Score = 98.7 bits (108), Expect = 6e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| |||| | ||| ||||| || | || || ||||| ||||| ||||| || Sbjct 39012 CCTCCTCTCAGACGCAGCACCAGATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCTGAC 39071 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| || || || || || || |||||||| || |||||||| | || Sbjct 39072 AGTGTGCGGCCATCCTCTAGCTGTTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGA 39131 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || || ||||| | || || ||||| || || || | ||| ||| || | Sbjct 39132 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGAC--ATTCTCAATGGTGTCACTGGGTTCCA 39189 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | || |||||||| || || | |||||| ||||||||||||||| Sbjct 39190 CTTCCAGTGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCATG 39239 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | ||| ||||| |||| ||| ||| ||||| || || ||||| || Sbjct 39468 CCCCCTCTCAGACGCAGCACCAGATGAAGAGTGGACTCTTTCTGGATATTGTAGTCTGAC 39527 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| | || ||||| || || || ||||||||||| || || ||||| | || Sbjct 39528 AGTGTGCGGCCTTCTTCCAGCTGTTTGCCAGCGAAGATCAGACGCTGTTGGTCGGGTGGA 39587 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || ||||| | || || ||||| | | || | ||| ||| || || Sbjct 39588 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACC 39647 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | || || ||||| || || ||||| || ||||| |||||||| Sbjct 39648 TCCAGTGTAATAGTCTTGCCAGTCAGGGTTTTCACAAAAATCTGCAT 39694 >seq47 Length=5048387 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | ||| || ||||||||||| ||||| ||||| | || |||| Sbjct 1632229 CAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCGGCCATC 1632288 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| ||||| || || ||||| || || || || || | || | || || ||||| Sbjct 1632289 TTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCTTTGTC 1632348 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || ||||||| | || | ||| | | || || |||| ||| ||||| Sbjct 1632349 CTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGGGTAATGGT 1632408 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | |||||| |||||||||||||| Sbjct 1632409 CTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632441 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | ||| || ||||||||||| ||||| ||||| | || |||| Sbjct 1632457 CAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCGGCCATC 1632516 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| ||||| || || ||||| || || || || || | || | || || ||||| Sbjct 1632517 TTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCTTTGTC 1632576 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || ||||||| | || | ||| | | || || |||| ||| ||||| Sbjct 1632577 CTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGGGTAATGGT 1632636 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | |||||| |||||||||||||| Sbjct 1632637 CTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632669 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | ||| || ||||||||||| ||||| ||||| | || |||| Sbjct 1632685 CAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCGGCCATC 1632744 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| ||||| || || ||||| || || || || || | || | || || ||||| Sbjct 1632745 TTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCTTTGTC 1632804 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || ||||||| | || | ||| | | || || |||| ||| ||||| Sbjct 1632805 CTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGGGTAATGGT 1632864 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | |||||| |||||||||||||| Sbjct 1632865 CTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325608633245276