Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3420 197 1e-44 seq44 127 2e-23 >seq3420 Length=6548 Score = 197 bits (218), Expect = 1e-44 Identities = 679/1050 (65%), Gaps = 14/1050 (1%) Strand=Plus/Plus Query 281431 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 281490 |||||| || || || |||||||| | ||| || |||| ||||| || || || |||| Sbjct 3972 CACATTCAGGATTCCGTTGGCATCGATATCGAAAATGACCTCAATCTGCGGCACTCCTCG 4031 Query 281491 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 281550 |||| ||| |||| | ||| | ||| | || ||| || |||||||| || | Sbjct 4032 GGGAGCTGGTCGGATATCAGACAAGTCAAACTTGCCAAGAAGGTTGTTATCTTTGGTCAT 4091 Query 281551 TTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGT 281610 | ||| || || || | ||| | ||| || ||| || || | ||||| || Sbjct 4092 CGACCTTTCGCCTTCAAAGACTTGAACGAGAACACTAGCTTGGTTTTCAGTGTAAGTGGT 4151 Query 281611 AAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 281670 || ||| || || | || || || ||||| | | || | | |||||| | Sbjct 4152 GAAAACTTGGGTTTGCCTTGTGGGGATGGTGGTGTTGCGTTTGATCAGAGCGGTCATCAC 4211 Query 281671 ACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTG 281730 |||||||| ||||| | |||||||| ||||||| |||||| | ||| | | || || Sbjct 4212 CCCACCAGCCGTTTCAATCCCAAGAGACAGAGGAGCGACATCCAGTAGCAACAAATCCTG 4271 Query 281731 AAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAAC 281790 | || ||| | | |||| || || ||||| || | ||| || ||||| || || Sbjct 4272 CACGTTCTCAGACTTATCACCAGTTAGGATGGCTGCCTGGACAGCTGCTCCATACGCTAC 4331 Query 281791 AGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAG 281850 |||||||| ||||| | ||| ||| || | ||| ||| || || | | ||| | Sbjct 4332 GGCTTCATCTGGATTGATGCTTTTATTCAGCTCTTTCCCACCAAAGAAGTCTTGAAGCAT 4391 Query 281851 TTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTG 281909 || ||| | || || || | | || ||||| || | ||||| || | | ||| Sbjct 4392 TT-TCTGGATTTTGGGGATCCTGGTGGAGCCTCCCACAAGGACAATGTCCTTAATCTGCA 4450 Query 281910 ATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACA 281969 || || | | | ||||| | | |||| ||||||||||| || | | |||| Sbjct 4451 GCTTCTCAATTCTGCAATCCCGCAGAGCTTTCTCAACGGGTTCCAGTGTACTCCGGAACA 4510 Query 281970 AGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTT 282029 ||| | ||||| || || ||| || || | | | | ||||||| |||| Sbjct 4511 GGTCACCATTCAGTTCCTCAAACCGAGCCCTGGTGATGGAGGTGTAGAAATCAATCCCTT 4570 Query 282030 CGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCAC 282089 | |||| || |||| ||||| | | || || ||||| || | | || |||| Sbjct 4571 CAAACAGGGAGTCAATCTCAATGCTGGCCTGCGTGCTGGAAGACAGGGTCCTCTTGGCAC 4630 Query 282090 GTTCACATGCTGTCCTTAGTCTTCGTAAGGCTT--TTGCTGATTGATTCAAATCTGTTTT 282147 | ||||| || || | | | || | ||| ||| | ||| | | ||| | || Sbjct 4631 GCTCACAAGCGGTGCGCAAACGCCGCACCGCTCGCTTGTT--TTGTGTGATATCCTTCTT 4688 Query 282148 ATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAAAATCTTCA 282205 | |||| | ||||| || || | | ||| | || || || | ||||||||||| Sbjct 4689 AAATTTCCGTTTGAACTCCTCGATGAA--ATGGCTCACCAGGCGGCTGTCAAAATCTTCC 4746 Query 282206 CCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGAC 282265 ||||||| | ||| | || | ||| | | | || | ||| | || || |||| | | Sbjct 4747 CCTCCCAGGTGAGTGTCCCCAGCCGTGGATTTGACCTCGAAGACCCCTTCCTCAATGGTC 4806 Query 282266 AAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTG 282325 || | || ||||||| || ||||| |||| ||||| || || ||||| | || Sbjct 4807 AAGATAGAAACATCAAAAGTCCCACCCCCCAGGTCAAAGATCAGCACATTG--TGCTCAC 4864 Query 282326 TCTTGGT--TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTC 282383 | || ||| || || || || |||| |||||| |||||||||||||| || || | Sbjct 4865 CAGTTGTACTTTGGTCCAGGCCGTAAGCAATAGCAGCTGCAGTTGGTTCATTGATGATCC 4924 Query 282384 TCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGT 282443 ||| ||||| | |||| || || ||||| || ||||||||||| || ||| | Sbjct 4925 TCAGTACATTTAAGCCAGAGATGGCACCAGCATCCTTGGTGGCTTGTCTCTGGCTATCAT 4984 Query 282444 TAAAATATGCAGGAACAGTAATAACGGCAT 282473 |||| || |||||||| ||||| || |||| Sbjct 4985 TAAAGTAAGCAGGAACCGTAATGACAGCAT 5014 >seq44 Length=5213970 Score = 127 bits (140), Expect = 2e-23 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 282687 CATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCA 282746 || |||||| || |||||||| || | ||| |||| | ||||| ||||| ||||| | Sbjct 4119996 CACCAAAAACTGTGTTGGTTGGGTTCATTGCCACTTGGTTCTTGGCCGCATCACCAATGA 4120055 Query 282747 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 282806 | |||||| || || || | ||||| |||||| |||||||| ||||| ||||| | Sbjct 4120056 GTCTTTCTGTATCAGTGAAGGCCACATAGCTTGGAGTGGTGCGATTTCCTTGGTCATTGG 4120115 Query 282807 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAAT 282866 |||||||||||||||| |||| ||| | || || ||||| | || || || | || Sbjct 4120116 CAATAATTTCAACTTTTCCATGTTGGAAGACCCCCACACATGAGTAGGTGGTCCCGAGAT 4120175 Query 282867 CAATACCAATAGC 282879 ||||||||| ||| Sbjct 4120176 CAATACCAACAGC 4120188 Score = 118 bits (130), Expect = 8e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 282687 CATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCA 282746 || |||| | || ||||||||||| | || | || | ||||| ||||| || || | Sbjct 4132135 CACCAAAGACTGTGTTGGTTGGATTCATCGCCACCTGGTTCTTGGCGGCATCACCGATGA 4132194 Query 282747 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 282806 | |||||| || ||||| | |||||| |||||| ||||| |||||||| || || | Sbjct 4132195 GCCTTTCTGTATCAGTAAAGGCAACATAGCTTGGAGTGGTGCGGTTACCTTGGTCGTTGG 4132254 Query 282807 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAAT 282866 |||||||||||||||| |||| ||| | || || ||||| |||| ||||| | || Sbjct 4132255 CAATAATTTCAACTTTGCCATGTTGGAAGACTCCGACACAGGAGTAAGTGGTTCCAAGAT 4132314 Query 282867 CAATACCAAT 282876 |||| || || Sbjct 4132315 CAATGCCTAT 4132324 Score = 113 bits (124), Expect = 3e-19 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 |||||||| | || || |||| ||| ||||| ||||||||||| ||||| | | ||| Sbjct 4130277 TTTTTATCTAACCCGTAAGCAATAGCTGCAGCTGTTGGTTCATTTATAATACGGAGTACA 4130336 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||| |||| |||| ||||||||||| ||||| | || ||||| || || || Sbjct 4130337 TTGAGGCCAGAAATTGTTCCGGCATCTTTAGTTGCTTGACGCTGAGAATCATTGAAGTAA 4130396 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACT 282481 ||||| || |||| ||| || | ||| ||| Sbjct 4130397 GCAGGTACGGTAACAACAGCGTTTGTAACT 4130426 Score = 86.0 bits (94), Expect = 5e-11 Identities = 103/139 (74%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 282339 CAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGAC 282398 |||| ||||| |||| |||||| || ||||||||||| || || | | |||||||| | Sbjct 4119297 CAAG-CCATAGGCAATAGCAGCTGCTGTTGGTTCATTGATTATACGAAGCACATTAAGGC 4119355 Query 282399 CAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAA 282458 |||| || | || ||||| || ||||| || | || || || || ||||| || || | Sbjct 4119356 CAGCGATGGTACCAGCATCCTTTGTGGCCTGCCGCTGAGAGTCATTGAAATAAGCTGGGA 4119415 Query 282459 CAGTAATAACGGCATCTGT 282477 | || | ||| |||| ||| Sbjct 4119416 CTGTGACAACAGCATTTGT 4119434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739589373208104