Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq94 132 5e-26 seq47 107 2e-18 >seq94 Length=3237593 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||||| | ||||| || | ||| | ||||||||||| || |||||||| || Sbjct 39011 GCCTCCTCTCAGACGCAGCACCAGATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCTGA 39070 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || ||||| || || || |||||||||||| |||||||||| ||||| ||||| || Sbjct 39071 CAGTGTGCGGCCATCCTCTAGCTGTTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGG 39130 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||||||||| || || || | | || | ||||| ||||||| || Sbjct 39131 AATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGTTCCAC 39190 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| | || | |||||||||||||| || || || || || ||||| Sbjct 39191 TTCCAGTGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 39238 Score = 116 bits (128), Expect = 4e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 137181 ATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC 137240 || ||| |||| | ||||| || || || | ||| || ||||| || |||||||| || Sbjct 38324 ATTGCCCCCTCTCAGACGCAGCACCAAGTGCAGTGTGGACTCTTTCTGAATGTTGTAGTC 38383 Query 137241 GCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 137300 || ||||| || || || || || |||||| |||||||||| ||||| ||||| Sbjct 38384 AGACAGTGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGG 38443 Query 137301 AGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTC 137360 || |||||||||||||| ||||| || | | || | ||||| |||| || Sbjct 38444 GGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTC 38503 Query 137361 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| |||| || | ||||||||||||| || || || || || |||||| Sbjct 38504 TACCTCAAGTGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATA 38555 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| | ||||| || | ||||| || || ||||| || || ||||| || | Sbjct 39468 CCCCCTCTCAGACGCAGCACCAGATGAAGAGTGGACTCTTTCTGGATATTGTAGTCTGAC 39527 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||||| ||||| || ||||| ||||| |||||||||| || || ||||| || Sbjct 39528 AGTGTGCGGCCTTCTTCCAGCTGTTTGCCAGCGAAGATCAGACGCTGTTGGTCGGGTGGA 39587 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||||||||| || || || | | ||| | ||||| ||||||| || Sbjct 39588 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACC 39647 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | |||||||| |||| ||||| || || || ||||| Sbjct 39648 TCCAGTGTAATAGTCTTGCCAGTCAGGGTTTTCACAAAAATCTGCAT 39694 >seq47 Length=5048387 Score = 107 bits (118), Expect = 2e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||||| || || || | ||| |||||||| || |||||||| || Sbjct 1632215 CCACCACGGAGACGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAG-- 1632272 Query 137245 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 || ||| ||| ||||| | || || |||||| |||| ||||| || ||||| |||| Sbjct 1632273 ATAGTGTTCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAG 1632332 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | |||||||||||||| || || ||| | | || | ||||| | ||||| | Sbjct 1632333 GAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAA 1632392 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||||| || | |||||||| ||||| || || || || || |||||| Sbjct 1632393 CTTCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATA 1632442 Score = 104 bits (114), Expect = 2e-17 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 137256 |||| || || || | ||| |||||||| || |||||||| || || ||| ||| Sbjct 1632455 CGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAG--ATAGTGTTCGGC 1632512 Query 137257 --TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTT 137314 ||||| | || || |||||| |||| ||||| || ||||| ||||| |||||||||| Sbjct 1632513 CATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCTT 1632572 Query 137315 TGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCA 137374 |||| || || ||| | | || | ||||| | ||||| ||||||| || | Sbjct 1632573 TGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGGGTAA 1632632 Query 137375 CCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||||||| ||||| || || || || || |||||| Sbjct 1632633 TGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATA 1632670 Score = 102 bits (112), Expect = 8e-17 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 137256 |||| || || || | ||| |||||||| || |||||||| || || ||| ||| Sbjct 1632683 CGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAG--ATAGTGTTCGGC 1632740 Query 137257 --TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTT 137314 ||||| | || || |||||| |||| ||||| || ||||| ||||| |||||||||| Sbjct 1632741 CATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCTT 1632800 Query 137315 TGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCA 137374 |||| || || ||| | | || | ||||| | ||||| ||||||| || | Sbjct 1632801 TGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGGGTAA 1632860 Query 137375 CCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||||||| ||||| || || || || || ||||| Sbjct 1632861 TGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488414511412800