Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq94 176 9e-39 seq47 168 1e-36 seq135 107 4e-18 seq64 86.0 1e-11 >seq94 Length=3237593 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||||| |||||| || | || ||||||||||||||||| || || || || || Sbjct 39012 CCTCCTCTCAGACGCAGCACCAGATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCTGAC 39071 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || ||||| ||||| ||||||||||| || | || || || || || Sbjct 39072 AGTGTGCGGCCATCCTCTAGCTGTTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGA 39131 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || || || ||||| || || ||||| ||||| || ||| | ||||| ||| Sbjct 39132 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGTTCCACT 39191 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| ||||| ||||| ||||| |||||||| Sbjct 39192 TCCAGTGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 39238 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| | |||||| || | |||||||| ||||||||||| || ||||| || | Sbjct 38554 TACCCCCTCTGAGACGCAGGACCAGATGCAGAGTGGATTCTTTCTGGATGTTATAGTCTG 38613 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 |||| | | || ||||| || || || || |||||||| || | |||||||| || | Sbjct 38614 ATAGGGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGTTGATCGGGTG 38673 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || || || || ||||| || || ||||||||||| || ||| | ||||| | Sbjct 38674 GGATACCCTCTTTGTCCTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCA 38733 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || || |||||||| |||| || || ||||| |||||||| Sbjct 38734 CTTCCAGTGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAAATCTGCAT 38782 Score = 163 bits (180), Expect = 6e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||||| |||||| || | || ||||| || |||||||| ||||| || || | Sbjct 39466 TACCCCCTCTCAGACGCAGCACCAGATGAAGAGTGGACTCTTTCTGGATATTGTAGTCTG 39525 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| || ||||| ||||| ||||| || | ||||| || || | Sbjct 39526 ACAGTGTGCGGCCTTCTTCCAGCTGTTTGCCAGCGAAGATCAGACGCTGTTGGTCGGGTG 39585 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || || || ||||| || || ||||||||||| || ||| | ||||| | Sbjct 39586 GAATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCA 39645 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | |||| || || |||||||| |||| || || ||||| ||||||||| Sbjct 39646 CCTCCAGTGTAATAGTCTTGCCAGTCAGGGTTTTCACAAAAATCTGCATT 39695 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | |||||| || || || ||||| || |||||||| || || || || || Sbjct 39240 CCTCCTCTGAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAA 39299 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || |||||||| || || ||||| ||||| || | ||||||||||| || Sbjct 39300 AGTGTGCGGCCATCTTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCTGGTGGG 39359 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || || || || || ||||| ||||| || ||| | |||||||| Sbjct 39360 ATACCCTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCTACC 39419 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || ||||| |||| ||||| ||||| |||||||| Sbjct 39420 TCAAGTGTGATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 39466 Score = 150 bits (166), Expect = 4e-31 Identities = 176/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 82573 TTTATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATAT 82632 |||| || | || ||||||| |||||| || |||||||| || || |||||||| || | Sbjct 38317 TTTAACAATTGCCCCCTCTCAGACGCAGCACCAAGTGCAGTGTGGACTCTTTCTGAATGT 38376 Query 82633 TATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTT 82692 | || ||||| || | | ||| || || || || || ||||||||||| || | || | Sbjct 38377 TGTAGTCAGACAGTGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCT 38436 Query 82693 GATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCAT 82752 | || || || || ||||| || || || || || || || || || ||||| || ||| Sbjct 38437 GGTCGGGGGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTCACGTTCTCAATGGTGTCAC 38496 Query 82753 TAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || ||||| || | || || |||||||| |||| ||||| ||||| |||||||| Sbjct 38497 TGGGCTCTACCTCAAGTGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 38554 >seq47 Length=5048387 Score = 168 bits (186), Expect = 1e-36 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || ||||| | || ||||||||||| || || || |||||||| ||| || Sbjct 1632226 ACGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCGGCC 1632285 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | || || ||||||||||| || | |||||||| ||||| || ||||| || Sbjct 1632286 ATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCTTT 1632345 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| ||||| || || ||||| || ||| | ||||| ||||| | || || Sbjct 1632346 GTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGGGTAAT 1632405 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| ||||| ||||| |||||||| Sbjct 1632406 GGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632441 Score = 168 bits (186), Expect = 1e-36 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || ||||| | || ||||||||||| || || || |||||||| ||| || Sbjct 1632683 CGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCGGCCA 1632742 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | || || ||||||||||| || | |||||||| ||||| || ||||| || Sbjct 1632743 TCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCTTTG 1632802 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| ||||| || || ||||| || ||| | ||||| ||||| | || || Sbjct 1632803 TCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGGGTAATG 1632862 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| ||||| ||||| ||||| ||||||||| Sbjct 1632863 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATT 1632898 Score = 167 bits (184), Expect = 5e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || ||||| | || ||||||||||| || || || |||||||| ||| || Sbjct 1632455 CGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCGGCCA 1632514 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | || || ||||||||||| || | |||||||| ||||| || ||||| || Sbjct 1632515 TCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCTTTG 1632574 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| ||||| || || ||||| || ||| | ||||| ||||| | || || Sbjct 1632575 TCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGGGTAATG 1632634 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| ||||| ||||| |||||||| Sbjct 1632635 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632669 >seq135 Length=1930211 Score = 107 bits (118), Expect = 4e-18 Identities = 127/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 60139 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGT 60198 |||||| ||| || |||||||||||| | || || || | || || | || || || Sbjct 82889 GATAGCGTCAGCCTTGTGGTGGTACTATGTCTCAAAGGGAGTTGAGTATATGGACACAGT 82830 Query 60199 GTTTTTCATACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTT 60258 ||||||||| | ||||| || ||||| ||||| || || | || || ||||||||||| Sbjct 82829 GTTTTTCATCTTGAGGAAGAAATTTAACCAGGTCAGCTTCCTGCATGTGTATCATCATTT 82770 Query 60259 TACTATGTTTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAA 60310 || |||||||| | | ||| | || || |||||| | || ||||||||| Sbjct 82769 CACGATGTTTACCCTGTGGTGGATTGGAATCAAATGGGTCGCAGGAGGTCAA 82718 >seq64 Length=4326226 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 ||||||||||| || ||||| ||||| |||||||| || |||||| | || ||||| || Sbjct 3507307 CCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCTATGGTATCACTGGGCTCTACCTCG 3507366 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 | || || || ||||| || | || || ||||| |||||||| || Sbjct 3507367 AGTGTGATGGTTTTGCCCGTGAGGGTTTTCACAAAGATCTGCATGAT 3507413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981560460868156