Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq94 134 1e-26 >seq94 Length=3237593 Score = 134 bits (148), Expect = 1e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || || ||| ||| | ||||| ||||||||||| Sbjct 38358 GTGGACTCTTTCTGAATGTTGTAGTCAGACAGTGTGCGACCA-TCCTCCAGCTGCTTGCC 38416 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || |||||||||||||| || |||||||| ||||| ||| || ||| Sbjct 38417 AGCAAAGATCAGACGCTGCTGGTCGGGGGGAATGCCTTCTTTGTCCTGGATTTTGGCCTT 38476 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| ||||||| || || | |||| ||| ||||||||||| || Sbjct 38477 CACGTTCTCAATGGTGTCACTGGGCTCTACCTCAAGTGTGATGGTCTTGCCGGTCAGGGT 38536 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 38537 CTTCACAAAGATCTGCAT 38554 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| |||||||| || || ||| || || ||||| ||||| Sbjct 39498 GTGGACTCTTTCTGGATATTGTAGTCTGACAGTGTGCGGCCTTCTTCCAGCTGTTTGCCA 39557 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || ||||| |||||||| || |||||||| ||||| |||||| |||| Sbjct 39558 GCGAAGATCAGACGCTGTTGGTCGGGTGGAATGCCTTCTTTGTCCTGGATCTTAGCCTTG 39617 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| ||||| |||| ||||| || | || | || ||||| ||||| ||| Sbjct 39618 ACATTTTCAATGGTGTCACTGGGTTCCACCTCCAGTGTAATAGTCTTGCCAGTCAGGGTT 39677 Query 133644 TTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 39678 TTCACAAAAATCTGCAT 39694 Score = 118 bits (130), Expect = 1e-21 Identities = 149/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || |||||||| || ||||| || || ||| | | | ||||| ||||| || || Sbjct 39042 GTAGATTCTTTCTGGATGTTGTAGTCTGACAGTGTGCGGCCA-TCCTCTAGCTGTTTACC 39100 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || |||||||||||||| || |||||||| ||||| |||||| ||| Sbjct 39101 AGCAAAGATCAGACGCTGCTGGTCGGGTGGAATGCCTTCTTTGTCCTGGATCTTAGCCTT 39160 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| |||| ||||| || | |||| ||| |||||||||| || Sbjct 39161 GACATTCTCAATGGTGTCACTGGGTTCCACTTCCAGTGTGATGGTCTTGCCGGTCAAGGT 39220 Query 133643 TTTTACGAAAATCTGCATGGCT 133664 || || || ||||||||| || Sbjct 39221 CTTGACAAAGATCTGCATGCCT 39242 Score = 109 bits (120), Expect = 5e-19 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| || ||||| || || ||| ||| | || || ||||||||||| Sbjct 38814 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGTGTGCGACCA-TCTTCAAGCTGCTTGCC 38872 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| || |||||||| || || || |||||||||||||| ||| || ||| Sbjct 38873 AGCAAAAATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTT 38932 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||| |||| || || || | |||| ||| ||||| |||| || Sbjct 38933 CACGTTTTCAATGGTGTCACTGGGTTCAACCTCCAATGTGATGGTCTTGCCAGTCAAGGT 38992 Query 133643 TTTTACGAAAATCTGCATGGCT 133664 || || |||||||||||| || Sbjct 38993 CTTGACAAAAATCTGCATGCCT 39014 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | |||||||||||||| || ||||| || | ||| | | | || || || Sbjct 39261 AAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAAAGTGTGCGGCCA-TCTTCTAG 39319 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | || || ||||| || || || ||||| || |||||||| ||| Sbjct 39320 CTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCTGGTGGGATACCCTCCTTGTCCTGGAT 39379 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || ||| | | ||||| ||||| |||| || || || | |||| ||||||||| Sbjct 39380 TTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCTACCTCAAGTGTGATGGTTTTGCC 39439 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || || |||||||| Sbjct 39440 AGTCAGGGTCTTCACAAAGATCTGCAT 39466 Score = 107 bits (118), Expect = 2e-18 Identities = 145/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTGC 133521 ||||| |||||||| || || || || || | | ||| || || |||||||||| Sbjct 38586 GTGGATTCTTTCTGGATGTTATAGTCTG--ATAGGGTACGGCCATCTTCCAGCTGCTTGC 38643 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || ||||| || ||||| ||||| || || ||||| |||||| || Sbjct 38644 CGGCAAAGATCAGACGCTGTTGATCGGGTGGGATACCCTCTTTGTCCTGGATCTTAGCCT 38703 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| ||||| |||| ||||| || | |||| ||| ||||| ||||| | Sbjct 38704 TGACATTTTCAATGGTGTCACTGGGTTCCACTTCCAGTGTGATGGTCTTGCCAGTCAGGG 38763 Query 133642 TTTTTACGAAAATCTGCATG 133661 |||| || |||||||||||| Sbjct 38764 TTTTGACAAAAATCTGCATG 38783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483292669316960