Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq5 127 2e-24 seq132 122 1e-22 seq26 96.9 4e-15 seq199 93.3 5e-14 >seq5 Length=15003573 Score = 127 bits (140), Expect = 2e-24 Identities = 239/344 (69%), Gaps = 12/344 (3%) Strand=Plus/Plus Query 162634 AGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATA 162693 |||| || || |||||| ||||| || | || || || ||||||| | ||| | Sbjct 11235402 AGCTTTCGGACGATCTCTGCGTTGGTTTTGATTGGGAAATCCATGCCGCACAAATTCAGG 11235461 Query 162694 ACATATTTCCACTTAACGCTGAGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTG 162752 | || ||||| | || ||| || | |||||| | | |||||||||||| ||||| Sbjct 11235462 AGGTACTTCCATTGCACT-TGACTCTTGAGCAGATCTTCCATACAGTTCAGATCCGCCTG 11235520 Query 162753 GACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACA--AAGACATTG 162810 ||| ||| |||||| ||||| ||||| ||| | | | | || | || || ||||| Sbjct 11235521 GACCCGAGACCACGAAGCGTAGACGAC-ATCTTCTAATTTGCGG-GTCAGGAAAACATTA 11235578 Query 162811 TCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACAT---CGGGTCCGCTTTCCTA 162867 ||||||||||| | | | |||||||| ||||| | || | | ||||||| Sbjct 11235579 GCGAAACACGAAGCGACGGCTCGGACGGCCAGAAAGAACTTTCCCGAG---GATTTCCTA 11235635 Query 162868 TCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAAC 162927 || ||||| | |||||| | ||||| |||| ||||||| | ||||||| || || ||| Sbjct 11235636 TCCACGTGGATGCAGTACACGTTCTGGGGGGTGTAGATGCCTCTCAGTAGCCTTTCAAAC 11235695 Query 162928 ATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAA 162971 ||||| | || | ||| | ||| || ||| | || || ||||| Sbjct 11235696 ATCTCGACGTTCTCGTGGATCACAATCGAAAAGGCAATCGGGAA 11235739 >seq132 Length=2005055 Score = 122 bits (134), Expect = 1e-22 Identities = 562/872 (64%), Gaps = 21/872 (2%) Strand=Plus/Plus Query 162121 TCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGAT 162180 || ||||| || || || ||||||||| | ||| || |||||||| ||||| || | | Sbjct 1954194 TCAAACTTATTAGCAAATAGGTGATGC---TGCTTTAACATCCAATTCAGATCGCCTGCT 1954250 Query 162181 CCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCG 162240 || | || ||||| || || | ||| || |||| || ||||| | || || | | Sbjct 1954251 CCATATACACACACCGAACGGATGTGTGTCCCAGTGCAAGGAGGATAAGGAGCTCCCTTG 1954310 Query 162241 TCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAG 162300 ||||| || || |||| ||| || || | ||||| | || | |||||| ||| Sbjct 1954311 GAAACATCACCTTCCAAGTAGCTCCATTTTACCAGCCTAGCTAAAGAGTTCATGTCAGAG 1954370 Query 162301 GTGTCGTACTTGTACACTGAC-GGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGT 162359 || | ||| | | || || || | ||||||||| |||| |||||| || || Sbjct 1954371 ACATCAAATTTGGT-ATTAACAGGAACCGATCCAGGAACGTTAGGCATTCTCTGAAGTGT 1954429 Query 162360 AGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGAC 162419 ||||||| ||| || |||||||| | || || ||| |||| | || | | ||| Sbjct 1954430 TGCCCACATGTGCTCATCTGGACTGAAAGTGTCTTTCTCCCACATAAGAAAGTTC-TGAA 1954488 Query 162420 CGTTTTATCGTAT---AGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCT 162476 |||| | || | | ||||| || | || | |||| |||||| || || Sbjct 1954489 T-TTTTGT-GTTTCCCAATATGTATTCCACAAAATCTCTACTGACAACAAAGTAGGCACT 1954546 Query 162477 ACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGA-CCCGTGTTGACTA 162535 || ||||||| ||| | || || || |||| |||| || | ||| | || || Sbjct 1954547 TCCTGAAAACATTGGTGTTGCAATTGGTGGAGGCTGTTTG-CTCGTTCCCATATTCTTTA 1954605 Query 162536 CCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTG--GTAGACGG 162593 | | || | || || || || |||| || | |||| || ||| | | Sbjct 1954606 GCCTCCCATTCACTACTTGATGCTGCTGTTTCCATCTCTTC-TCTTTATGAGGTA-ATGT 1954663 Query 162594 GTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAG 162653 | ||||| || || ||||| |||| ||||||||| || | |||||| || | Sbjct 1954664 CTTCTCGGTTTCAAGGCTGTTCTTACCCTTCAAGGCCTTGAGGTTCTCCACCATTTCAAA 1954723 Query 162654 ATTGGTCTT-AAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGC 162712 |||||| || ||||||||| || ||||||||||| || | |||||||| | | Sbjct 1954724 ATTGGTTTTTAAGGGGAAA-TCCAAACCGCAGAGATTGATCAAGTATTTCCATGTTGAGT 1954782 Query 162713 TGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGT 162772 | | | ||||||| | ||||| | ||| ||||| || | || |||| || | Sbjct 1954783 TTCTTTGGAGAAGATCCTTCATGCAGTTTACATCAGCCTGTACCCTGCTAAACGATGCAT 1954842 Query 162773 ACACGACGCTCTCCAACCTAG-TGGCGACAAAGACATTGTCGAAACACGAAACTATCCCC 162831 | || |||| ||| | | |||||| |||||| ||||| ||||| || || || ||| Sbjct 1954843 AAGTTACACTCT-CAAGTTGGCTGGCGATAAAGACGTTGTCAAAACATGACACAATGCCC 1954901 Query 162832 ATCACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 | || || |||| | | | ||| | || || || || ||||| | |||| Sbjct 1954902 TTAACTGCATCAAAGAAAGTTGTAGATGATTTTTTGTCAACATGAACACAGTAAAAATTC 1954961 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 ||||| || || || | || | | ||| | ||||| || || | || || | || Sbjct 1954962 TGAGGTGCATATATTGATCTTAAAAGTCTTCCAAACATGTCAATTCTGTGATGGATTACT 1955021 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 ||||| || ||||| || ||||| | ||||| Sbjct 1955022 ATAGAGTAGGCTATAGGAAACTCTTCTTCCTC 1955053 >seq26 Length=7764900 Score = 96.9 bits (106), Expect = 4e-15 Identities = 454/714 (64%), Gaps = 29/714 (4%) Strand=Plus/Minus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| || ||| ||||| | || | |||||||||||||| |||| | || | | || Sbjct 2928232 GCCAGCTCCTTAGCTGACGTAAAATCATCCACGTGAATGAAAGAGTCTGCTGGAATGAAA 2928173 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTG--CCATAAGAG 177063 | ||||| || ||||| |||| || | || | || || | |||| | ||| | Sbjct 2928172 GTCTCGTAGTTTTCTCTGGATGGGCCCAAGACCACAGGCACTGTGCCTGTTCGCAAAGGG 2928113 Query 177064 ATCGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGA 177123 | ||||| ||||| ||||| || ||| | || | ||||| ||||| | || |||| Sbjct 2928112 TT--ATAGAGCTTTTCAGTAATGTAATCCTTATGGATTGAGTTTTCAAAGGAAAGGTAGA 2928055 Query 177124 ATTTACAGGAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGT 177183 |||| || || || | || ||||| |||| || | | ||| || || | || Sbjct 2928054 ATTTGCAACTAGTTAACAATGGTATGAAATCATTATTGTTCAGATATTCCCCAAAGGCGC 2927995 Query 177184 TCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTCACGT 177243 ||| | ||| ||||| |||| || | || || ||||| | | |||||| | Sbjct 2927994 GCCCATGCACAGAGATATCAATGTACTTGATCAGTTCATTATAGTACTTTGCTCTCACAT 2927935 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCGGGAACGGGAT 177303 ||| |||| | ||| || ||||| || |||| ||||||||| |||||| | Sbjct 2927934 GGTTAGGACTCCAGTGGCTCACAACCCAACACACTAGCTTGCTCTTATTGGGAAC----T 2927879 Query 177304 TCGATACTAATGCAGTGTCT---CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360 | | | || || ||| || | | || || ||||| ||||| |||||||| | Sbjct 2927878 TTAAAA--TCTGAAGAATCTGGACTCATAATCAGAGACCCATAAGGCACTTGAATATCTG 2927821 Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTT------TTCTATACCTTGTTTGA 177414 | || | | || ||||| || || || ||| ||| | || |||| || Sbjct 2927820 AATCTTGACGATAAGTTAAGGTTAGGTT-AAATTGTTGGCCAAGCCCATTCCTTTTT--- 2927765 Query 177415 AGGGGCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGG 177474 || |||| | || || || | ||||||||| | ||| || || || | ||| | | Sbjct 2927764 --GGACTGTGGGTCGGTGACTCCATGTTCATCCAAACCCATTTCTGGAAAGGTGGCCGTG 2927707 Query 177475 GTTCCGTAGGTAG--AGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGC 177532 | || || || || | | ||| || ||| || || ||||| |||| | || || Sbjct 2927706 GCTCTGTGGGCAGGTTGGACAAG--TCCCCACTGATGTCCCTGTGATGAATAAGGACAGC 2927649 Query 177533 ATTGGCTTTGTAATAAACAGATCTGTCTACGGTAACGTGACACGCACGTATGTTAAATCT 177592 || || |||| || | | ||| || || | || || || | ||||| || || Sbjct 2927648 ATGGGATTTGCTGTACAGATTTCTATCCTGAGTCAAATGGCAGCCATGAATGTTGAACCT 2927589 Query 177593 GGAGCTACACGCATTTAGATCAAATGGGTGGCCGTAGGGCCACGTCCAGAGGAG 177646 ||| |||| | ||| ||| ||| | || || | |||||| ||| | ||| Sbjct 2927588 TGAGTTACAAGAATTGAGACTAAAAGCCTGACCAAAAGGCCACAGCCAAATGAG 2927535 >seq199 Length=890228 Score = 93.3 bits (102), Expect = 5e-14 Identities = 263/396 (66%), Gaps = 15/396 (4%) Strand=Plus/Minus Query 162630 CTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATT 162689 ||| ||||| | || ||||| || ||||| || | ||| ||||| ||||||||||||| Sbjct 489452 CTTGAGCTGTTGGACGATCTCGAGGTTGGTTTTGATGGGGAAGTCCATGCCGCAGAGATT 489393 Query 162690 AATAACATATTTCCACTTAACGCTGAGTCCGTACAG---ATCCTGTAGACAGTTCAGATC 162746 || | |||||||| | | | ||| | ||| |||| | |||||||| || Sbjct 489392 GATGAAGTATTTCCAGCT---CCGGTGTCTGGCCAGCAATTCCTCCATGCAGTTCAGGTC 489336 Query 162747 GGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGAC 162806 ||||| || | ||| || ||||| || || ||||| | |||||||||| || Sbjct 489335 TGCCTGCACCCTGGCCCAGGAGGCGTAGACAACATTCTCCTGTTTCCTGGCGACAAATAC 489276 Query 162807 ATTGTCGAAACACGAAACTATCCCCATCACGGC--CAGTGAGAACAT-CGGGTCCGCTTT 162863 ||| ||| || | | | | | | ||||| | ||| | ||| || | | ||| Sbjct 489275 GTTGGGGAAGCAGGCGGCCACACTCCTGACGGCAGCTTTGAAATCATGCGAG---GATTT 489219 Query 162864 CCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTC 162923 | || | ||| |||||||| | |||||| || ||||||||||| || || | || || Sbjct 489218 ATTGTCGATGTGGACGCAGTAGATATTCTGCGGCGCGTAGATGGCTCTGAGCAGCCTTTC 489159 Query 162924 GAACATCTC-TATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCT 162982 || || ||||| || || | || || ||||| || || ||||| || |||| | Sbjct 489158 AAAGTGATCGGATCTT-TGATGGATGACCATGGAATAAGCAATTGGGAATTCCTCCTCTT 489100 Query 162983 CGCGACTGAGAGACCCTGTAAAGTACTTGC-GGTCC 163017 | | || || || || | |||||| | ||||| Sbjct 489099 CTCTGCTCAGTGAGAACGTGATGTACTTTCTGGTCC 489064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578278686598400