Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq94 93.3 1e-13 >seq94 Length=3237593 Score = 93.3 bits (102), Expect = 1e-13 Identities = 150/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| ||||| || || || || || || || |||| |||||| Sbjct 39697 AAAATG---CAGATTTTTGTGAAAACCCTGACTGGCAAGACTATTACACTGGAGGTGGAA 39641 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 |||||| | ||| || ||| ||||| || || |||||||| ||| || Sbjct 39640 CCCAGTGACACCATTGAAAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCACCC 39581 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 ||| || | || |||||||| || || ||| ||||||| || | || || | || Sbjct 39580 GACCAACAGCGTCTGATCTTCGCTGGCAAACAGCTGGAAGAAGGCCGCACACTGTCAGAC 39521 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||||||||||| |||||||| || || Sbjct 39520 TACAATATCCAGAAAGAGTCCACTCTTCATCTGGT 39486 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || || || || || ||||| ||||||||||| |||| Sbjct 38779 CAGATTTTTGTCAAAACCCTGACTGGCAAGACCATCACACTGGAAGTGGAACCCAGTGAC 38720 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||| || || ||||| || || || || || Sbjct 38719 ACCATTGAAAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATCCCACCCGATCAACAG 38660 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| ||||| |||||| |||||||||| | || | | || || ||| || Sbjct 38659 CGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTATCAGACTATAACATC 38600 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||| || ||||| || || || Sbjct 38599 CAGAAAGAATCCACTCTGCATCTGGT 38574 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || || || || ||||| ||||||||||| |||| Sbjct 39235 CAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACACTGGAAGTGGAACCCAGTGAC 39176 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || |||||||| ||| || ||| || Sbjct 39175 ACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCACCCGACCAGCAG 39116 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || || ||| | || ||||| | || || | || |||||| || Sbjct 39115 CGTCTGATCTTTGCTGGTAAACAGCTAGAGGATGGCCGCACACTGTCAGACTACAACATC 39056 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||| |||||||| || || || Sbjct 39055 CAGAAAGAATCTACTCTCCATCTGGT 39030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181499727356884