Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1535 167 3e-35 seq201 114 2e-19 seq1451 113 6e-19 seq480 105 1e-16 seq121 86.0 9e-11 >seq1535 Length=14141 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||| | |||||||| ||||| |||| |||| ||| |||| ||||| Sbjct 8027 TACAAGGTGATGAAGCAGGTCCACCCGGACACCGG-----CATC-TCCTCCAAGGCCATG 8080 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| ||||| || ||||| |||| ||||||| ||||||| ||| Sbjct 8081 AGCATCATGAACTCCTTTGTGAATGACATCTTCGAGCGCATCGCGTCCGAGGCTTCCCGC 8140 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | | | ||||||||||||||||||||| Sbjct 8141 CTGGCGCAGTACAACAAGCGCTCGACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGC 8200 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 8201 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 8249 >seq201 Length=881128 Score = 114 bits (126), Expect = 2e-19 Identities = 173/244 (71%), Gaps = 8/244 (3%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| | || || ||||||||| | |||||||| ||||| ||| |||| Sbjct 61192 TACTCCTTCTACATGTACAAGGTGATGAAGCAGGTTCACCCGGACACCAG-----CATC- 61139 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||| |||| ||||| ||||||||||| | || || ||||| |||| ||| ||| Sbjct 61138 TCCTCCAAGGCCATGAGCATCATGAACTCCTGTG--AATGACATCTTCGAGCGCTTCGCG 61081 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 || |||| ||||||| | | |||||||||| || ||| | | | ||||| Sbjct 61080 TCCAAGGCTTCCTGCCTGGCTCAGTACAACAAGCGCTCGACCATCACCTCCAGGAAGATC 61021 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 |||||| ||||||||||| | ||| | | || ||||||| ||| ||| | ||||||||| Sbjct 61020 CAGACCACCGTGCGCCTGCTGCTGCCCAGGGAGCTGGCCAAGCAGGCCATGTCCGAGGGC 60961 Query 725139 ACCA 725142 |||| Sbjct 60960 ACCA 60957 >seq1451 Length=14805 Score = 113 bits (124), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| ||||| |||| |||| ||| | | ||||| Sbjct 8044 TACAAGGTGCTGAAGCAGGTCCACCCGGACACCGG-----CATC-TCCTCCCGGGCCATG 8097 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||| ||||| || ||| |||| | |||||||||||| | |||| | ||| Sbjct 8098 AACGTCATCAACTCCTTCATCACCGACGTCTTCGACCGCATCGCCTGCGAGTGCTCCCGC 8157 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||| | | ||||||||| | || ||| | |||| ||||||||||| || || || Sbjct 8158 CTGATCCAGTACAACAAGCGGCAGACCATCTCCTCGCGGGAGATCCAGACGGCGGTCCGG 8217 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| || || |||||| ||||||| ||||||||||||||| Sbjct 8218 CTGCTGCTGCCGGGGGAGTTGGCCAAGCACGCCATCTCCGAGGGCACCA 8266 >seq480 Length=88459 Score = 105 bits (116), Expect = 1e-16 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 724977 ATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTG 725036 ||||||||||||||||| ||||| || | || || |||| || ||||||| | ||| Sbjct 44080 ATCATGAACTCGTTTGTGAACGATGTGTTTGAGCGGATCGCCAGCGAGGCCTTGCACCTC 44021 Query 725037 GCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTG 725096 || | | |||||||||| ||| ||| | || ||| | ||||||| || ||||| Sbjct 44020 GCCCAATACAACAAGCGCTGCACAATCACTAGCCGTGAGGTAAAGACCGCTGTCCGCCTA 43961 Query 725097 ATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| ||| || ||||| | ||||||||| || |||||||||| Sbjct 43960 CTGCTGCCCGGGGAGCTGGCTAAGCACGCCGTGTCTGAGGGCACCA 43915 >seq121 Length=2118225 Score = 86.0 bits (94), Expect = 9e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1455964 GAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATC 1456023 ||||| ||| || | || || |||| ||||| || |||||||| ||||| || ||||| Sbjct 637694 GAGGTGCAAGTGACGGAAGCCCGTTGCTTTTATGGTTTCCAGATTGCCATGGAGAACATT 637753 Query 1456024 CACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGA 1456078 || || |||| ||| ||||| |||||||||||| ||||||| || | |||| Sbjct 637754 CATTCAGAAATGTACAGTCTCCTTATCGACACCTACATCAAGGATCCCATTGAGA 637808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175766035227048