Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq797 95.1 2e-14 >seq797 Length=31933 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || ||||| ||||| || || |||||| || | || || || || || |||| Sbjct 10465 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTAGGTTCTGCAATGTGGATAT 10524 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||||||| ||||| ||||||||| | || || | ||| || ||||| || |||||| | | Sbjct 10525 TCATCGACTGACTCTGATCGATGTAGGCACCGCGATCAGCTGCCATCTTAATAATAGTTT 10584 Query 68561 TTTGAGGAATTTCCCAAATAGTCTT 68585 | || | |||||||| | ||| || Sbjct 10585 TCTGTGAGATTTCCCAGACAGTTTT 10609 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 69324 TATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTT 69383 |||||||||||| || ||||| | || || || |||| ||| || || || ||||| | Sbjct 16702 TATCTCTGTACACAGGTTACTGGACTTAATGGTTCCCAAATTCTGGTGGTTGGTCTTTCT 16761 Query 69384 GTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 ||| |||||||| ||||| | || |||| || ||||| || |||| || || ||||| Sbjct 16762 GTTGCAGGCGTCTTTGTACATCATGTACGGGGTGCCAGTCTCTGTCTGTGACTCAATAAT 16821 Query 69444 AG 69445 || Sbjct 16822 AG 16823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686726734822560