Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq51 105 5e-18 seq121 96.9 3e-15 seq84 96.9 3e-15 >seq51 Length=4861936 Score = 105 bits (116), Expect = 5e-18 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 || |||||||| |||||||| || ||||| || ||||||||||||||||||||||| || Sbjct 4858833 AATCCGTTTGACTTTATGGAGAACATTTCTTTAGAAGGCAAAACAAACTTTTTTGAGAAG 4858774 Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 || |||||||| || ||| | ||||| |||||| Sbjct 4858773 CGTGTTGGAGAGTACCAGAGGATGGGTGTCATG 4858741 Score = 100 bits (110), Expect = 2e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||||||| | | || || || ||||| ||||| || |||||||| || || ||| Sbjct 4861011 CAAGAAGTTCAAATCACCGAGGCTCGCTGTTTCTATGGTTTCCAAATTGCTATGGAGAAT 4860952 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||| || || ||||| |||||||| || ||||| |||||||| ||| Sbjct 4860951 ATTCACTCTGAGATGTATAGTCTTCTTATTGATACTTACATCAAGGAT 4860904 >seq121 Length=2118225 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 ||||| ||||| || || ||||| | ||| || || || || || |||||||| || || Sbjct 638804 GGAGACCGACTGGTAGCTTTTGCTGCTGTTGAGGGGATATTTTTCTCAGGATCATTCGCT 638863 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 ||||| |||||| | ||||||||||| | ||||| || | || ||||| |||||| | Sbjct 638864 GCCATTTTTTGGCTGAAGAAACGAGGGCTAATGCCAGGCCTTACCTTTTCCAATGAGCTG 638923 Query 44243 ATAAGTCGTGATGAAG 44258 || || | ||||||| Sbjct 638924 ATCAGCAGGGATGAAG 638939 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 || || || ||| | | ||||| || || |||||||| || || |||||||| || || Sbjct 637691 CAGGAGGTGCAAGTGACGGAAGCCCGTTGCTTTTATGGTTTCCAGATTGCCATGGAGAAC 637750 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 |||||||| |||||||||||||| || || || || |||||||| ||| Sbjct 637751 ATTCATTCAGAAATGTACAGTCTCCTTATCGACACCTACATCAAGGAT 637798 >seq84 Length=3616636 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 41076 TGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGAC 41135 |||||||| ||||| ||||| |||||||| || ||| ||||||| |||||||| || Sbjct 1912645 TGTCAGTTCTACGTACTAAATGGGGAACTGTCCTGCCAACTGTATCAGAGATCAGGAGAT 1912704 Query 41136 ATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCA 41195 |||| || || || || ||||| || || || ||| | | || |||||||||||||| Sbjct 1912705 GTGGGGCTTGGCGTTCCATTTAATATTGCCAGCTATTCCTTACTGACGTATATGATTGCC 1912764 Query 41196 CACGTTAC 41203 || || || Sbjct 1912765 CATGTCAC 1912772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397353287930020