Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq797 87.8 2e-12 >seq797 Length=31933 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 105497 GGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTG 105556 ||| |||| ||||||||| | || ||||||||||||||||||| || || || ||| || Sbjct 11097 GGTGTTCGAAACAGTCTCTTGATTTCTCCAATGCCAACAGCCTCTACAGCTCAGATCCTG 11038 Query 105557 GGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCG 105616 ||||| ||||| | | |||| || ||||| | || || || || ||| ||| | Sbjct 11037 GGTAACAATGAGTCCATTGAGCCGTACACCAGCAATATTTACACAAGGAGAGTGCTCTCA 10978 Query 105617 GGAGAGTT 105624 |||||||| Sbjct 10977 GGAGAGTT 10970 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/158 (73%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 104886 TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAG 104945 ||||| | |||||| | |||| || || |||||||| || || |||||| | ||||||| Sbjct 16832 TGTGGTATGCTATTATTGAGTCACAGACAGAGACTGGCACCCCGTACATGATGTACAAAG 16773 Query 104946 ACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG---AGTTCCAATC 105002 ||||||| ||| ||||| || || |||||||||| || ||| ||| || | Sbjct 16772 ACGCCTGCAACAGAAAGACCAACCACCAGAATTTGGGAACCATTAAGTCCAGT---AACC 16716 Query 105003 TCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAG 105040 | |||||||| || |||| | ||| ||| |||||| Sbjct 16715 TGTGTACAGAGATAGTGGAGTATACCAGCAAGGATGAG 16678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583106206724960