Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq51 98.7 1e-15 seq895 95.1 1e-14 >seq51 Length=4861936 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| |||| |||||| || || | | ||||||||| || || ||||||||| Sbjct 4860283 TCATCTCTGCTGATCAGTTCATTAGAGAAGGTCAAGCCAGGCATCAGACCTCGCTTCTTC 4860342 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 ||||| || || ||| ||| || ||| ||| ||||| ||||| ||| ||||| || Sbjct 4860343 AACCAGAAAATAGCAGCGAATGATCCAGAGAAAAAGATTCCTTCTACAGCAGCAAAAGCC 4860402 Query 74892 ACAA 74895 |||| Sbjct 4860403 ACAA 4860406 >seq895 Length=26986 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||||||||| |||| ||| || |||||||||||||| ||| || ||||| ||||| Sbjct 24553 GTGAAAATGTACCGAGGGCTGGCTGCATCCTTGCCACCGTGAAGCCGTGTACCAAATTGA 24494 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| || ||| | | ||| || |||||||||||| ||||| ||| ||| Sbjct 24493 CCAATGGGCTGCAGAAGGCTGATGTTATTACTGCCCACAAAGTTCTGAGCTAAGCCAACA 24434 Query 117425 ATCGT 117429 || || Sbjct 24433 ATTGT 24429 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| ||||| || | |||||| |||||||||||||| ||||| || ||||| || Sbjct 24553 GTGAAAATGTACCGAGGGCTGGCTGCATCCTTGCCACCGTGAAGCCGTGTACCAAATTGA 24494 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAA 152141 ||| ||||| || ||| ||| ||| || |||||| || |||||||| || Sbjct 24493 CCAATGGGCTGCAGAAGGCTGATGTTATTACTGCCCACAAAGTTCTGAGCTAA 24441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547070960399200