Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq94 181 1e-40 seq51 82.4 9e-11 >seq94 Length=3237593 Score = 181 bits (200), Expect = 1e-40 Identities = 171/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || |||||||| || || || |||||||| || || || || || || | || Sbjct 38782 ATGCAGATTTTTGTCAAAACCCTGACTGGCAAGACCATCACACTGGAAGTGGAACCCAGT 38723 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | |||||||| || |||||||| ||||| || || || || || Sbjct 38722 GACACCATTGAAAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATCCCACCCGATCAA 38663 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| || || |||| ||||||||| |||||||||| Sbjct 38662 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTATCAGACTATAAC 38603 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || ||||||||||| ||||| ||| ||||||| Sbjct 38602 ATCCAGAAAGAATCCACTCTGCATCTGGTCCTGCGTCT 38565 Score = 181 bits (200), Expect = 1e-40 Identities = 171/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||||||||| | || |||||||| || || | |||||||| | || Sbjct 39010 ATGCAGATTTTTGTCAAGACCTTGACTGGCAAGACCATCACATTGGAGGTTGAACCCAGT 38951 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| ||||| ||||||||||| || ||||| ||||| ||| Sbjct 38950 GACACCATTGAAAACGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 38891 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||||||||| ||||| || || |||| ||| || || | ||||| || Sbjct 38890 CAGCGTCTGATTTTTGCTGGCAAGCAGCTTGAAGATGGTCGCACACTGTCTGACTACAAC 38831 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||||||||| || || | || |||||||| Sbjct 38830 ATCCAGAAGGAATCCACACTGCACTTGGTGTTGCGTCT 38793 Score = 178 bits (196), Expect = 1e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| | ||||||||||| || || || || || || | || Sbjct 39238 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACACTGGAAGTGGAACCCAGT 39179 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | |||||||| || |||||||| || || ||||| || |||||| Sbjct 39178 GACACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCACCCGACCAG 39119 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||||||||| || || ||||||| || || || ||||||| || Sbjct 39118 CAGCGTCTGATCTTTGCTGGTAAACAGCTAGAGGATGGCCGCACACTGTCAGACTACAAC 39059 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || ||||| ||||| ||||| || ||||||| Sbjct 39058 ATCCAGAAAGAATCTACTCTCCATCTGGTGCTGCGTCT 39021 Score = 172 bits (190), Expect = 6e-38 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || ||||||||||| || || |||||||| ||| | || Sbjct 38554 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACACTTGAGGTAGAGCCCAGT 38495 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| ||||| |||||||| || || ||||| || |||||| Sbjct 38494 GACACCATTGAGAACGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCCCCCGACCAG 38435 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| || ||||||| ||| || || | ||||| || Sbjct 38434 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGCACACTGTCTGACTACAAC 38375 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 | || || || ||||| || || | || ||||||| Sbjct 38374 ATTCAGAAAGAGTCCACACTGCACTTGGTGCTGCGTCT 38337 Score = 170 bits (188), Expect = 2e-37 Identities = 189/251 (75%), Gaps = 7/251 (3%) Strand=Plus/Minus Query 27376 CTTaaaaaaaTGGC---CAGAAATATTACTATAATGCAAATCTTTGTCAAGACGCTTACC 27432 ||||||||| || | |||||| | | |||||| || ||||| || || || || Sbjct 39723 CTTAAAAAATTGCCTTTCAGAAAAACAA----AATGCAGATTTTTGTGAAAACCCTGACT 39668 Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 |||||||||||||| || ||||| || | |||| | ||||| |||| | |||||||| Sbjct 39667 GGCAAGACTATTACACTGGAGGTGGAACCCAGTGACACCATTGAAAATGTCAAGGCTAAG 39608 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || |||||||| || || ||||| || ||||| |||||||| || || ||||| || || Sbjct 39607 ATCCAGGACAAAGAAGGCATTCCACCCGACCAACAGCGTCTGATCTTCGCTGGCAAACAG 39548 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 || || || | || || || ||||||| ||| |||| || || |||||||||||||| Sbjct 39547 CTGGAAGAAGGCCGCACACTGTCAGACTACAATATCCAGAAAGAGTCCACTCTTCATCTG 39488 Query 27613 GTCTTGCGTCT 27623 || ||||||| Sbjct 39487 GTGCTGCGTCT 39477 Score = 163 bits (180), Expect = 3e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || ||||| || || || |||||||| || | || Sbjct 39466 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAAACCATCACACTTGAGGTAGAACCCAGT 39407 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| ||||| |||||||||||||| || || ||||| || Sbjct 39406 GACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAGGGTATCCCACCAGATCAA 39347 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| || || |||| || || || ||||||| || Sbjct 39346 CAGCGCCTGATCTTCGCTGGCAAGCAGCTAGAAGATGGCCGCACACTTTCAGACTACAAC 39287 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || || |||||||| ||| | || ||||||| Sbjct 39286 ATCCAGAAAGAGTCCACTCTCCATTTGGTGCTGCGTCT 39249 >seq51 Length=4861936 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 |||||||| ||| |||||||| || || ||||| |||||| | ||||||||||| | Sbjct 4860401 GCTTTTGCTGCTGTAGAAGGAATCTTTTTCTCTGGATCATTCGCTGCTATTTTCTGGTTG 4860342 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833 || ||||| || |||||||| || || | || || || || |||||| Sbjct 4860341 AAGAAGCGAGGTCTGATGCCTGGCTTGACCTTCTCTAATGAACTGATC 4860294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570159239228480