Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq98 96.9 5e-15 >seq98 Length=3115460 Score = 96.9 bits (106), Expect = 5e-15 Identities = 180/262 (69%), Gaps = 12/262 (5%) Strand=Plus/Minus Query 13770 CCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTC----CGGCGACGAGTTCATCCG 13825 || |||||| | |||||| ||||||||||| |||| | ||| ||||||| || Sbjct 89695 CCCCAGAACGTGTACTGCATCCACGTGGACAACAAGACGTCTCGG----GAGTTCAAGCG 89640 Query 13826 GGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGA 13885 || || | | ||| | |||||| ||||| ||||||| | | | | Sbjct 89639 AGGGGTGAGGATGCTGGCCGGCTGCTTCGACAACGTCTTCCTGGCCTCCAAGTGGGAGCG 89580 Query 13886 CGTGGTGTACGGCTCCTGGAGTCGCG--TGCAGGCCGACCTCAGCTGCATGTCGGACCTG 13943 || |||||||| || ||||| ||||||||||| | | ||||||| ||||||| Sbjct 89579 GGTCGTGTACGGTGGCTTC--TCGCGGCTGCAGGCCGACGTGAACTGCATGCAGGACCTG 89522 Query 13944 GACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTC 14003 || || |||||| ||||| ||| | | ||||||||||| ||| | ||||||| Sbjct 89521 ATCGTGTCGCCCGTCCGGTGGAAGTATGTCATTAACCTGTGCGGCCAGGATTACCCGCTC 89462 Query 14004 AAGACCAACCTGGAGATCGTGC 14025 |||||||||| || ||||||| Sbjct 89461 AAGACCAACCGCGACATCGTGC 89440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658564601175040