Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq47 152 4e-32 seq94 149 5e-31 >seq47 Length=5048387 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| |||||| | ||||| |||||||| ||||| Sbjct 1632441 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACCAAGT 1632382 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| |||||| || || || |||||||||||||| || || |||||| Sbjct 1632381 GACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGATCAA 1632322 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || |||||||| | || | || || |||||| Sbjct 1632321 CAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTATCTGACTACAAC 1632262 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| || || || || ||||| ||||| ||||| | || ||||| Sbjct 1632261 ATTCAGAAAGAATCCACATTACACTTGGTGCTGCGTCTCCGTGGTGG 1632215 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| |||||| | ||||| |||||||| ||||| Sbjct 1632669 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACCAAGT 1632610 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| |||||| || || || |||||||||||||| || || |||||| Sbjct 1632609 GACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGATCAA 1632550 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || |||||||| | || | || || |||||| Sbjct 1632549 CAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTATCTGACTACAAC 1632490 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || || || ||||| ||||| |||| | || ||||| || Sbjct 1632489 ATTCAGAAAGAATCCACATTACACTTGGTGCTGCGACTCCGTGGTGGTAT 1632440 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| |||||| | ||||| |||||||| ||||| Sbjct 1632897 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACCAAGT 1632838 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| |||||| || || || |||||||||||||| || || |||||| Sbjct 1632837 GACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGATCAA 1632778 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || |||||||| | || | || || |||||| Sbjct 1632777 CAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTATCTGACTACAAC 1632718 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || || || ||||| ||||| |||| | || ||||| || Sbjct 1632717 ATTCAGAAAGAATCCACATTACACTTGGTGCTGCGACTCCGTGGTGGTAT 1632668 >seq94 Length=3237593 Score = 149 bits (164), Expect = 5e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| ||||| |||||| ||||||| || || |||||||| Sbjct 39694 ATGCAGATTTTTGTGAAAACCCTGACTGGCAAGACTATTACACTGGAGGTGGAACCCAGT 39635 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || || |||||||||||||| |||||||| ||| Sbjct 39634 GACACCATTGAAAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCACCCGACCAA 39575 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCG-ACCGTTTCCGATTACAA 27166 |||||| | || | ||| |||||||| ||||||| || || || | || || ||||| Sbjct 39574 CAGCGTCTGATCTTCGCTGGCAAACAGCTGGAAGA-AGGCCGCACACTGTCAGACTACAA 39516 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | ||| |||| ||||| || | || || || Sbjct 39515 TATCCAGAAAGAGTCCACTCTTCATCTGGTGCTGCGTCTGAGAGGGGGTAT 39465 Score = 131 bits (144), Expect = 1e-25 Identities = 161/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| ||||| ||||| ||||| |||||| | || || || ||||||||||| Sbjct 38786 CGGCATGCAGATTTTTGTCAAAACCCTGACTGGCAAGACCATCACACTGGAAGTGGAACC 38727 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 ||| | ||||| | ||||| || || || |||||||| || || |||||||| Sbjct 38726 CAGTGACACCATTGAAAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATCCCACCCGA 38667 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 |||||||||| | || | |||||||| || ||||||| | ||| | || || || Sbjct 38666 TCAACAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTATCAGACTA 38607 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 ||||| || || || || || | ||| |||| ||||| Sbjct 38606 TAACATCCAGAAAGAATCCACTCTGCATCTGGTCCTGCGT 38567 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||||||||||| | || || ||||| || || || Sbjct 38554 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACACTTGAGGTAGAGCCCAGT 38495 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || ||||| || |||||||||||||| || ||||| || Sbjct 38494 GACACCATTGAGAACGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCCCCCGACCAG 38435 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || |||| || || || | || || |||||| Sbjct 38434 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGCACACTGTCTGACTACAAC 38375 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 ||||| || ||||| || | || ||||| ||||| || | || |||| Sbjct 38374 ATTCAGAAAGAGTCCACACTGCACTTGGTGCTGCGTCTGAGAGGGGGCA 38326 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||||||||| | || || || ||||||||||| Sbjct 39239 CATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACACTGGAAGTGGAACCCAG 39180 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| ||||| || || || |||||||||||||| |||||||| || Sbjct 39179 TGACACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCACCCGACCA 39120 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | || || ||||| | || || | || | || || ||||| Sbjct 39119 GCAGCGTCTGATCTTTGCTGGTAAACAGCTAGAGGATGGCCGCACACTGTCAGACTACAA 39060 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || || || || | ||| |||| ||||| || | || ||||| Sbjct 39059 CATCCAGAAAGAATCTACTCTCCATCTGGTGCTGCGTCTGAGAGGAGGCAT 39009 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| ||||| | || || ||||| || ||||| Sbjct 39466 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAAACCATCACACTTGAGGTAGAACCCAGT 39407 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || ||||| || ||||| || || || ||||| |||||| Sbjct 39406 GACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAGGGTATCCCACCAGATCAA 39347 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| ||||| || | ||||| | || |||| || |||||| Sbjct 39346 CAGCGCCTGATCTTCGCTGGCAAGCAGCTAGAAGATGGCCGCACACTTTCAGACTACAAC 39287 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | |||||||| ||||| | | || ||||| Sbjct 39286 ATCCAGAAAGAGTCCACTCTCCATTTGGTGCTGCGTCTCAGAGGAGGCAT 39237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434803124878080