Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq84 113 4e-20 >seq84 Length=3616636 Score = 113 bits (124), Expect = 4e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||| | ||| |||||| ||||| || |||||| | ||||| || |||||||| ||| Sbjct 1912606 GATGTTCCTAAGATGGCTCTCCCTCCCTGCCACGCTCTCTGTCAGTTCTACGTACTAAAT 1912665 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 ||||| ||||||||||| || ||||| |||| ||||| ||||| | || || || || Sbjct 1912666 GGGGAACTGTCCTGCCAACTGTATCAGAGATCAGGAGATGTGGGGCTTGGCGTTCCATTT 1912725 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 || ||||| || || | | || ||||| ||||| || |||||| Sbjct 1912726 AATATTGCCAGCTATTCCTTACTGACGTATATGATTGCCCATGTC 1912770 Score = 113 bits (124), Expect = 4e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 |||||| || ||||| ||||| || | | || || ||||| || || || || || | Sbjct 1912770 GACATGGGCAATCATATACGTCAGTAAGGAATAGCTGGCAATATTAAATGGAACGCCAAG 1912711 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||| ||||| |||| ||||| || ||||||||||| |||||||| |||||||| Sbjct 1912710 CCCCACATCTCCTGATCTCTGATACAGTTGGCAGGACAGTTCCCCATTTAGTACGTAGAA 1912651 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || ||||| | |||||| || ||||| |||||| ||| | ||| Sbjct 1912650 CTGACAGAGAGCGTGGCAGGGAGGGAGAGCCATCTTAGGAACATC 1912606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448143588050880