Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq94 89.7 4e-13 >seq94 Length=3237593 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 |||||||| |||||||||||||| || ||||| || ||||||| | || || ||| | Sbjct 39697 AAAATGCAGATTTTTGTGAAAACCCTGACTGGCAAGACTATTACACTGGAGGTGGAACCC 39638 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| || | ||| ||||| || || ||||||||||| |||| | Sbjct 39637 AGTGACACCATTGAAAAT--GTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCACCCG 39580 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || || || | || || || || ||||| |||| || | |||| |||| || | Sbjct 39579 ACCAACAGCGTCTGATCTTCGCTGGCAAACAGCTGGAAGAAGGCCGCACACTGTCAGACT 39520 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| |||||| |||| | ||| |||| ||||| || | || || Sbjct 39519 ACAATATCCAGAAAGAGTCCACTCTTCATCTGGTGCTGCGTCTGAGAGGGGG 39468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355770436704108