Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq94 167 5e-36 seq47 158 3e-33 seq19 89.7 1e-12 seq64 84.2 5e-11 >seq94 Length=3237593 Score = 167 bits (184), Expect = 5e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || ||||||||||||||||| ||||| || || || | || || | || ||| Sbjct 39483 AGCACCAGATGAAGAGTGGACTCTTTCTGGATATTGTAGTCTGACAGTGTGCGGCCTTCT 39542 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| |||||||| || || |||||||| || |||| ||||| |||||| Sbjct 39543 TCCAGCTGTTTGCCAGCGAAGATCAGACGCTGTTGGTCGGGTGGAATGCCTTCTTTGTCC 39602 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || ||||| ||||||||| | ||| ||||| || || || ||| Sbjct 39603 TGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACCTCCAGTGTAATAGTC 39662 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || || || ||||| | ||||||||| Sbjct 39663 TTGCCAGTCAGGGTTTTCACAAAAATCTGCATTTT 39697 Score = 163 bits (180), Expect = 7e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || |||||||||||||| |||||||| || || | ||| || | |||||||| |||||| Sbjct 39264 TGGAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAAAGTGTGCGGCCATCTTCTAGCTGC 39323 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| |||||||| ||||| ||||| || || || | || |||||||||||||| || Sbjct 39324 TTGCCAGCGAAGATCAGGCGCTGTTGATCTGGTGGGATACCCTCCTTGTCCTGGATTTTG 39383 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||||| || || ||||||||| | ||| ||||| || ||||| || || || || Sbjct 39384 GCCTTCACATTCTCAATGGTGTCACTGGGTTCTACCTCAAGTGTGATGGTTTTGCCAGTC 39443 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| | |||||| Sbjct 39444 AGGGTCTTCACAAAGATCTGCAT 39466 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || |||||||| ||||| ||||||||||| || | ||||| | |||||| Sbjct 38571 AGGACCAGATGCAGAGTGGATTCTTTCTGGATGTTATAGTCTGATAGGGTACGGCCATCT 38630 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || || ||||| || || || | || || |||||| Sbjct 38631 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGTTGATCGGGTGGGATACCCTCTTTGTCC 38690 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || ||||| ||||||||| | ||| || || || ||||| ||| Sbjct 38691 TGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACTTCCAGTGTGATGGTC 38750 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || ||||| | |||||| Sbjct 38751 TTGCCAGTCAGGGTTTTGACAAAAATCTGCAT 38782 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||||||||||| || ||||| || || | || || | ||||| Sbjct 38343 AGCACCAAGTGCAGTGTGGACTCTTTCTGAATGTTGTAGTCAGACAGTGTGCGACCATCC 38402 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || || || ||||| || |||| ||||| |||||| Sbjct 38403 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGGGGAATGCCTTCTTTGTCC 38462 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || |||||||| || ||||||||| | || ||||| || ||||| ||| Sbjct 38463 TGGATTTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCTACCTCAAGTGTGATGGTC 38522 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 38523 TTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 38554 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || ||||| || || |||||||| || || | || || | |||||||| ||||| Sbjct 38807 GTGCAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATCTTCAAGCTG 38866 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 |||||| || || || || || || || || || |||| ||||||||||||||||| || Sbjct 38867 CTTGCCAGCAAAAATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTTT 38926 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||||||||||| ||||||||| | ||||||||| | ||||| ||||| || || Sbjct 38927 GGCCTTCACGTTTTCAATGGTGTCACTGGGTTCAACCTCCAATGTGATGGTCTTGCCAGT 38986 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | ||||| ||||| | |||||| Sbjct 38987 CAAGGTCTTGACAAAAATCTGCAT 39010 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || ||||| || ||||| |||||||| || || | || || | ||||| Sbjct 39027 AGCACCAGATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCTGACAGTGTGCGGCCATCC 39086 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| || || || ||||| || || || ||||| || |||| ||||| |||||| Sbjct 39087 TCTAGCTGTTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATGCCTTCTTTGTCC 39146 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | ||| || || || ||||| ||| Sbjct 39147 TGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGTTCCACTTCCAGTGTGATGGTC 39206 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| ||||| | |||||| Sbjct 39207 TTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 39238 >seq47 Length=5048387 Score = 158 bits (174), Expect = 3e-33 Identities = 170/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||| || || | ||| | ||||| ||||| || ||||| || || | || || Sbjct 1632676 ACGGAGTCGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGT 1632735 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| ||||||||| || ||||| || || ||||| |||||||||| || Sbjct 1632736 TCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCC 1632795 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| |||||||||||||| ||| ||||| || ||||||||| |||||| || || Sbjct 1632796 TTCTTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAG 1632855 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| || || | ||||| ||||| | ||||||||| Sbjct 1632856 GGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 1632900 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||| || || | ||| | ||||| ||||| || ||||| || || | || || Sbjct 1632448 ACGGAGTCGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGT 1632507 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| ||||||||| || ||||| || || ||||| |||||||||| || Sbjct 1632508 TCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCC 1632567 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| |||||||||||||| ||| ||||| || ||||||||| |||||| || || Sbjct 1632568 TTCTTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAG 1632627 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || | ||||| ||||| | |||||| Sbjct 1632628 GGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632669 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||| ||||| || ||||| || || | || || | |||||||||| ||||||||| Sbjct 1632245 GTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCGGCCATCTTCCAACTGCTTGCCA 1632304 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| || || ||||| |||||||||| ||||| |||||||||||||| ||| Sbjct 1632305 GCAAAGATGAGACGCTGTTGATCAGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTG 1632364 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| || ||||||||| |||||| || || || || ||||| || || | ||| Sbjct 1632365 ACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAGGGTAATGGTCTTGCCAGTCAAGGTC 1632424 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | |||||| Sbjct 1632425 TTCACAAAGATCTGCAT 1632441 >seq19 Length=9386079 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881 || ||||||||||||||||| ||||||||| | || ||| ||| |||||||||||| Sbjct 4120341 GGCAGAGGAGGACAATCTGCATTGCGTTTTGCTCGTCTGAGAATGGAGAAGAGGCACAAC 4120400 Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCAAAGACAACAAGTGTTTT 139941 ||| || | ||||| || |||| || | ||| ||| |||| | | ||| Sbjct 4120401 TACGTGCGGAAAGTGGCGGAGACAGCCGTGCAGCTTTTCATCAGCAGCGATAAGGTGAAC 4120460 Query 139942 GTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCTGAC 140001 ||| | || | ||| |||| || || || || ||||| || ||||| | |||||| Sbjct 4120461 GTTGCCGGCTTGGTTCTGGCCGGATCAGCTGACTTCAAAACTGAGCTCAGTCAGTCTGAC 4120520 Query 140002 TTTTTTGACCCG 140013 | ||||||||| Sbjct 4120521 ATGTTTGACCCG 4120532 >seq64 Length=4326226 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||| ||||||||||| ||| || ||||| ||||| ||| | || |||||| Sbjct 3507307 CCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCTATGGTATCACTGGGCTCTACCTCG 3507366 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || |||||||| || || ||||| | |||||| Sbjct 3507367 AGTGTGATGGTTTTGCCCGTGAGGGTTTTCACAAAGATCTGCAT 3507410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158837085931460