Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq21204 163 7e-35 seq94 156 1e-32 seq47 118 3e-21 >seq21204 Length=16769 Score = 163 bits (180), Expect = 7e-35 Identities = 149/188 (79%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 7543 GGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTT 7602 ||| || |||| | || || |||||| |||| || ||||||||||| || ||||||||| Sbjct 5578 GGTGATGACCAAATCTATAATGTTATTGTTACTGCACATGCCTTTGTAATAATTTTCTTT 5637 Query 7603 TTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGT 7662 | ||||| || |||| || || ||||| ||||| ||||| | |||||||| |||||| Sbjct 5638 ATAGTTATACCTATTATAATCGGAGGTTTTGGAAACTGATTAATCCCTTTAATAATTGGT 5697 Query 7663 GCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCC 7722 || |||||||| ||||| ||| | | || ||||||||||| |||||| |||| |||||| Sbjct 5698 GCACCTGATATAGCTTTCCCACGAATAAATAATATAAGTTTCTGATTATTACCTCCTTCC 5757 Query 7723 TTATTTCT 7730 || |||| Sbjct 5758 TTTCTTCT 5765 Score = 87.8 bits (96), Expect = 4e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||| || |||||||||||||| ||||| || | |||||||| ||||| || | Sbjct 6159 TTCAGGATGGCCGAAAAATCAGAATAAGTGTTGGTATAAAATAGGATCTCCTCCTCCAGC 6100 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGT 370767 |||||||| || | ||||||| ||| | |||||| Sbjct 6099 CGGATCAAAGAATGTTGTATTAAGATTACGATCAGT 6064 >seq94 Length=3237593 Score = 156 bits (172), Expect = 1e-32 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || || || |||||||| ||||| |||| |||||| || | || || | || || Sbjct 39482 CAGCACCAGATGAAGAGTGGACTCTTTCTGGATATTGTAGTCTGACAGTGTGCGGCCTTC 39541 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| || ||||||||||| || || ||||||||||| ||||| ||||| ||||| Sbjct 39542 TTCCAGCTGTTTGCCAGCGAAGATCAGACGCTGTTGGTCGGGTGGAATGCCTTCTTTGTC 39601 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| ||| |||||||| || |||||| || | || || || Sbjct 39602 CTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACCTCCAGTGTAATAGT 39661 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| |||| ||||| | || | |||||||| Sbjct 39662 CTTGCCAGTCAGGGTTTTCACAAAAATCTGCATTTT 39697 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| || || |||||||||||||| |||| || || || | | || | ||||| Sbjct 38570 CAGGACCAGATGCAGAGTGGATTCTTTCTGGATGTTATAGTCTGATAGGGTACGGCCATC 38629 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || || ||||| ||||| || ||||| || ||||| Sbjct 38630 TTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGTTGATCGGGTGGGATACCCTCTTTGTC 38689 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| ||| |||||||| || |||||| || | ||||| || Sbjct 38690 CTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACTTCCAGTGTGATGGT 38749 Query 225681 CTTGCCCGTCAAAGTTTT 225698 |||||| |||| ||||| Sbjct 38750 CTTGCCAGTCAGGGTTTT 38767 Score = 132 bits (146), Expect = 1e-25 Identities = 138/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||||||||| ||||| |||| ||||| || | | || | ||||||||||||||| Sbjct 39264 TGGAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAAAGTGTGCGGCCATCTTCTAGCTGC 39323 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||||||||| || || ||||| || || || ||||| |||||||| ||||| || Sbjct 39324 TTGCCAGCGAAGATCAGGCGCTGTTGATCTGGTGGGATACCCTCCTTGTCCTGGATTTTG 39383 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||||| || |||||||| || ||| || || | ||||| || ||||| ||| Sbjct 39384 GCCTTCACATTCTCAATGGTGTCACTGGGTTCTACCTCAAGTGTGATGGTTTTGCCAGTC 39443 Query 225691 A 225691 | Sbjct 39444 A 39444 Score = 129 bits (142), Expect = 1e-24 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| || |||||||| || |||| ||||| || | || || | |||||||| ||||| Sbjct 38807 GTGCAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATCTTCAAGCTG 38866 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||| || || || || || || || || ||||| ||||||||||| ||||| || Sbjct 38867 CTTGCCAGCAAAAATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTTT 38926 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||||| ||| |||||||| || ||| || || || ||||| |||||||| || Sbjct 38927 GGCCTTCACGTTTTCAATGGTGTCACTGGGTTCAACCTCCAATGTGATGGTCTTGCCAGT 38986 Query 225690 CAAAGTTTT 225698 ||| || || Sbjct 38987 CAAGGTCTT 38995 >seq47 Length=5048387 Score = 118 bits (130), Expect = 3e-21 Identities = 161/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| ||| || | ||| | ||||||||||| || | ||||| || | | || Sbjct 1632676 ACGGAGTCGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGT 1632735 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||||| | |||||| ||||| ||||| || || ||||| || || ||||| || Sbjct 1632736 TCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCC 1632795 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||| |||||||| || || || |||||||| | ||| || || | Sbjct 1632796 TTCTTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAG 1632855 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || |||||||| ||||| || || | || | |||||||| Sbjct 1632856 GGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 1632900 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| ||| || | ||| | ||||||||||| || | ||||| || | | || Sbjct 1632448 ACGGAGTCGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGT 1632507 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||||| | |||||| ||||| ||||| || || ||||| || || ||||| || Sbjct 1632508 TCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCC 1632567 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||| |||||||| || || || |||||||| | ||| || || | Sbjct 1632568 TTCTTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAG 1632627 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 || || |||||||| ||||| || || Sbjct 1632628 GGTAATGGTCTTGCCAGTCAAGGTCTT 1632654 Score = 107 bits (118), Expect = 5e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | ||| | ||||||||||| || | ||||| || | | || Sbjct 1632220 ACGGAGACGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGATAGTGT 1632279 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||||| | |||||| ||||| ||||| || || ||||| || || ||||| || Sbjct 1632280 TCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGAATGCC 1632339 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||| |||||||| || || || |||||||| | ||| || || | Sbjct 1632340 TTCTTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAACTTCAAG 1632399 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 || || |||||||| ||||| || || Sbjct 1632400 GGTAATGGTCTTGCCAGTCAAGGTCTT 1632426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192207217595576