Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq84 102 6e-17 >seq84 Length=3616636 Score = 102 bits (112), Expect = 6e-17 Identities = 127/173 (73%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| ||| |||| || ||||| | |||||||||||||| || || || || ||||| || Sbjct 1909931 CATATCCTTGTAGTCAGCTCCATAGTGCCTCCATTGGAAGCCATAAACAGGCCCCAGATC 1909872 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 ||||| || | | | || ||| ||||||| || |||| |||| ||||| || Sbjct 1909871 ACCCTCCTCTCGGGACATAAATCCCAATTTGTCCAGGAAATCTCGAGAACTATTGGCATC 1909812 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 27661 ||| |||||||| ||| | ||||| | |||||| || || || || || |||| Sbjct 1909811 CCAAATCTTTACTCCCCTTTCGGACAACTCTTTAGAATTCGTAGAACC-CTGA 1909760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369411710563724