Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq797 120 4e-22 seq51 102 1e-16 >seq797 Length=31933 Score = 120 bits (132), Expect = 4e-22 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||| |||||||| || |||||| || | || || || || || |||| Sbjct 10465 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTAGGTTCTGCAATGTGGATAT 10524 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||||||||||||| ||||||||| | || || | |||||| ||||| || ||||| || | Sbjct 10525 TCATCGACTGACTCTGATCGATGTAGGCACCGCGATCAGCTGCCATCTTAATAATAGTTT 10584 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGG 75612 | || | |||||||| | ||||||| | | | |||| |||||| || Sbjct 10585 TCTGTGAGATTTCCCAGACAGTTTTGTACAGTAACTTGAGATCATCAGG 10633 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||| || || || |||| ||| || || || ||| | ||||| || ||||| || || || Sbjct 24173 AGTGCCAGCGTTGAACAGTGTGGGTGAGGCGTGAATAAACCACTTCTCAGACAGGAGGTT 24232 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||| ||||||||||| || || || || | | ||||||||| |||| || | ||||| Sbjct 24233 GTAGGTTTCAATAACAGCATCAATGTCACTCTCATGAATTCCAACAGACACTCTCATCAG 24292 Query 77113 CATATGCTGAGGTCGTTC 77130 ||| || ||||| ||||| Sbjct 24293 CATGTGTTGAGGACGTTC 24310 >seq51 Length=4861936 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || | ||| ||||| || || | |||||||| || || ||||| || Sbjct 4860283 TCATCTCTGCTGATCAGTTCATTAGAGAAGGTCAAGCCAGGCATCAGACCTCGCTTCTTC 4860342 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 | ||| || ||||| ||||| |||||||| || || || ||||||||||| || || || Sbjct 4860343 AACCAGAAAATAGCAGCGAATGATCCAGAGAAAAAGATTCCTTCTACAGCAGCAAAAGCC 4860402 Query 46774 ACAAGTCTCTCTCC 46787 |||| || ||| || Sbjct 4860403 ACAATTCGCTCCCC 4860416 Score = 87.8 bits (96), Expect = 3e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 ||| || ||||| | ||||| || || ||||| ||||| ||||| || ||||||||||| Sbjct 4858741 CATGACACCCATCCTCTGGTACTCTCCAACACGCTTCTCAAAAAAGTTTGTTTTGCCTTC 4858800 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATT 46418 || || || || |||||||| ||||||||||| Sbjct 4858801 TAAAGAAATGTTCTCCATAAAGTCAAACGGATT 4858833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712745436737280