Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq94 116 9e-21 >seq94 Length=3237593 Score = 116 bits (128), Expect = 9e-21 Identities = 161/224 (72%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | || || | ||| ||||| |||||||| ||||||||||| || | | || Sbjct 39246 CTGAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAAAGTGTG 39305 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||||||| || || |||||||| || | ||| || || | | ||| || Sbjct 39306 CGGCCATCTTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCTGGTGGGATACCC 39365 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| || || ||||| || ||| |||| | | |||| ||| ||||| ||| Sbjct 39366 TCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGTTCTACCTCA 39422 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || |||||||| || || |||||||| |||| |||||| Sbjct 39423 AGTGTGATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 39466 Score = 102 bits (112), Expect = 2e-16 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||||||||| |||||||| ||||| ||||| || | | || | || ||| Sbjct 39483 AGCACCAGATGAAGAGTGGACTCTTTCTGGATATTGTAGTCTGACAGTGTGCGGCCTTCT 39542 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || |||||||| || | ||| ||||| | | || ||||| || || Sbjct 39543 TCCAGCTGTTTGCCAGCGAAGATCAGACGCTGTTGGTCGGGTGGAATGCCTTCTTTGTCC 39602 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| | || | | |||| ||| || || || || |||||| Sbjct 39603 TGGATCTTAGCCTTGACATTTTCAATGGTGTC---ACTGGGTTCCACCTCCAGTGTAATA 39659 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || || ||||| || | ||||||||| Sbjct 39660 GTCTTGCCAGTCAGGGTTTTCACAAAAATCTGCATTTT 39697 Score = 100 bits (110), Expect = 7e-16 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| |||||||| ||||| ||||||||||| || | | || | ||||| Sbjct 39027 AGCACCAGATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCTGACAGTGTGCGGCCATCC 39086 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 ||||| ||| || || ||||| || | ||||||||| | | || ||||| || || Sbjct 39087 TCTAGCTGTTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATGCCTTCTTTGTCC 39146 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | | |||| ||| || ||||| || || || Sbjct 39147 TGGATCTTAGCCTTGACATTCTCAATGGTGTC---ACTGGGTTCCACTTCCAGTGTGATG 39203 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || | ||||| || |||| |||||| Sbjct 39204 GTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 39238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153507334291884