Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq94 143 2e-29 >seq94 Length=3237593 Score = 143 bits (158), Expect = 2e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||||||| | |||||||| ||| || ||| ||||| ||||||||||| || Sbjct 38780 CATGCCGCCTCTCAGACGCAACACCAAGTGCAGTGTGGATTCCTTCTGGATGTTGTAGTC 38839 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || || |||||||| || ||||| |||| |||||||||||||| Sbjct 38840 AGACAGTGTGCGACCATCTTCAAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGATCTGG 38899 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| || || ||||| || | |||||||| || ||| Sbjct 38900 GGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCAATGGTGTCACTGGGTTC 38959 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||| || || ||||| || || | |||||| || || || |||||| Sbjct 38960 AACCTCCAATGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAAATCTGCATG 39011 Score = 138 bits (152), Expect = 8e-28 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| ||||||||||| | || |||||| ||||| ||| ||| || ||||| ||||| || Sbjct 39464 CATACCCCCTCTCAGACGCAGCACCAGATGAAGAGTGGACTCTTTCTGGATATTGTAGTC 39523 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || |||||||| || || || ||||||| |||||| || || | Sbjct 39524 TGACAGTGTGCGGCCTTCTTCCAGCTGTTTGCCAGCGAAGATCAGACGCTGTTGGTCGGG 39583 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||||| || ||| ||||| ||| | || | |||||||| || ||| Sbjct 39584 TGGAATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTC 39643 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| ||||| ||||| || || ||||| ||||| || || ||||| Sbjct 39644 CACCTCCAGTGTAATAGTCTTGCCAGTCAGGGTTTTCACAAAAATCTGCAT 39694 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 ||||||||||| | || ||||| ||| || ||| ||| || || |||||||| || | Sbjct 38328 CCCCCTCTCAGACGCAGCACCAAGTGCAGTGTGGACTCTTTCTGAATGTTGTAGTCAGAC 38387 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 ||| ||| | || ||||||||||| || |||||||||| ||||||||| || | || Sbjct 38388 AGTGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGGGGA 38447 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | ||||| || ||| || || |||| | |||| | |||||||| || || || Sbjct 38448 ATGCCTTCTTTGTCCTGGATTTTGGCCTTC-ACGTTCTCAATGGTGTCACTGGGCTCTAC 38506 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| | || || ||||| || || ||||||||||| ||||| ||||| Sbjct 38507 CTCAAGTGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 38554 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | || ||||| || || ||| ||| || ||||||||||| || Sbjct 39236 CATGCCTCCTCTGAGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTC 39295 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || || |||||||| || || ||||||| ||||| ||||||| Sbjct 39296 TGAAAGTGTGCGGCCATCTTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCTGG 39355 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||| ||||| ||| || || ||||| | | |||||||| || ||| Sbjct 39356 TGGGATACCCTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTC 39415 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || || || || || || ||||||||||| ||||| ||||| Sbjct 39416 TACCTCAAGTGTGATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 39466 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| |||||||| || | || ||||| || || ||| || || |||||||| || || Sbjct 38552 CATACCCCCTCTGAGACGCAGGACCAGATGCAGAGTGGATTCTTTCTGGATGTTATAGTC 38611 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || | || ||||||||||| ||||||||||||| |||||| ||||| | Sbjct 38612 TGATAGGGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGTTGATCGGG 38671 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||| || || ||| ||||| ||| | || | |||||||| || ||| Sbjct 38672 TGGGATACCCTCTTTGTCCTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTC 38731 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| |||| || || ||||| || || ||||| || || || || |||||| Sbjct 38732 CACTTCCAGTGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAAATCTGCATG 38783 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||||||| | || |||||| || || || || || ||||||||||| || Sbjct 39008 CATGCCTCCTCTCAGACGCAGCACCAGATGGAGAGTAGATTCTTTCTGGATGTTGTAGTC 39067 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || || ||||| || || |||||||||| ||||||||| || | Sbjct 39068 TGACAGTGTGCGGCCATCCTCTAGCTGTTTACCAGCAAAGATCAGACGCTGCTGGTCGGG 39127 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||||| || ||| ||||| ||| | | | |||||||| || ||| Sbjct 39128 TGGAATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGTTC 39187 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| |||| || || ||||| || || | |||||| || ||||| |||||| Sbjct 39188 CACTTCCAGTGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCATG 39239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359897369930868