Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq41 118 2e-21 seq100 98.7 1e-15 >seq41 Length=5334932 Score = 118 bits (130), Expect = 2e-21 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | ||||||||| |||||||||| || ||||| || ||| || || || Sbjct 1839844 TCACCTATCAGGATGAGTCGGCTGGTCTGGAAGAGCTGCTCATCCTCCCAGTCGGGGTGC 1839903 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| | || ||||| | |||||| |||| |||||||| || ||||||||| Sbjct 1839904 TCGACTTTCAAGATGTCACACACTCGGTTGTGCTCCCGCAGCCAGATCGTTGCGTACATC 1839963 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 || || || || ||||| ||||| || || || ||||| | |||| || || ||| Sbjct 1839964 ATCAGGCCTGGAACCAGACCAAAGAATTCCTGGCCCACAGCAAAGCGCAAGTGCTCCGGC 1840023 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATA 9464 || | ||||| ||| |||||| || || | || || || ||| ||||| Sbjct 1840024 ACATGAGGAGGGTAGGTCATGTCTACGGGGGCTTCCTTTACGATGGGAGGATA 1840076 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 9709 ||||||||||| || | |||||||||||||| | ||||| | || ||| ||||| Sbjct 1840547 CTTACCCCATGACCTAACCCTTTAGTGAAGGCTGCTCCTCGGCTCTGGTCTGTCTTAAAA 1840606 Query 9710 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 9769 ||||| || |||||||| || | || ||||||||||| | |||||| ||| ||||| Sbjct 1840607 AACTGATGGGTGAAATGCTGTGCGAAGAAGGCAAACATCATGTTGGTCTTCTGAGGATCA 1840666 Query 9770 GGAGTGAAGGTCCTCC 9785 || |||| || ||| Sbjct 1840667 GGGATGAACTTCTTCC 1840682 >seq100 Length=3005590 Score = 98.7 bits (108), Expect = 1e-15 Identities = 210/309 (68%), Gaps = 6/309 (2%) Strand=Plus/Minus Query 8279 TCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGA 8338 ||||| || |||| || | | ||||||| ||| | |||| ||| || || || | Sbjct 1384010 TCGGGCACCTGGAAAGCCACGTAAGGACACCTCTTTAGGTTGAGACAAACCAGCTTCTCA 1383951 Query 8339 ATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCT--CCGCCGAAGGTGCTGGGCTTCC 8396 || | ||| | |||||||| | || ||| |||| || ||||| || || ||||||| Sbjct 1383950 ATGGATGCCGTGTTGACGATGTCAAATCCC--GTCTTCCCTCCGAACGTACTTGGCTTCC 1383893 Query 8397 AGTACCCCGGGGAGCAGATGACG-TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCC 8455 | || || || |||| || | || |||| || || ||||||||||| ||||||||| Sbjct 1383892 AATATTGGGGAGAACAGA-GAGGATTTCCCATCAGCCCCTTGAGGGAGAAGGGAGCCCCC 1383834 Query 8456 AACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCG 8515 | || | ||||| || ||||| | ||||| | || |||||| || || || Sbjct 1383833 ATTTCCACCATGCTTTCCCCGAATAATGCGTTTTCCTGCGGAATTTCCAACAGGAGCCCA 1383774 Query 8516 GTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCC 8575 | ||| | |||| ||| || | ||| || || || ||| || || | || || ||| Sbjct 1383773 GGGTAAAATTCCAAAGCGTCAATGTCACCATACAGTGCCTCCAGCTCCCCCGCCATTTCC 1383714 Query 8576 TTTTCTCCT 8584 |||| ||| Sbjct 1383713 GTTTCCCCT 1383705 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||| || ||||| || | ||| ||||| || |||||||| | ||||| || Sbjct 1381187 GTCTGGAAGAGCTGCTCATCGCCCCAGGTGGGATGCTCCTGTTTCAGGATGTCGCAGACT 1381128 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAA 9374 |||||||| |||| |||||||| || ||||||||||| || || || | |||||| || Sbjct 1381127 CTGTTGTGCTCCCGTAGCCAGATGGTAGCGTACATCATCAGACCCGGGATCAGGCCGAA 1381069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716686791804160