Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq94 147 5e-30 seq47 116 9e-21 >seq94 Length=3237593 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||| || || || || || ||||| || || |||||| | ||| Sbjct 38779 CAGATTTTTGTCAAAACCCTGACTGGCAAGACCATCACACTGGAAGTGGAACCCAGTGAC 38720 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| ||||||||||| || ||||| || || || || Sbjct 38719 ACCATTGAAAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATCCCACCCGATCAACAG 38660 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| |||||||| | || || | || |||||| || Sbjct 38659 CGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTATCAGACTATAACATC 38600 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || |||||||| || |||||||| || || | |||||| Sbjct 38599 CAGAAAGAATCCACTCTGCATCTGGTCCTGCGTCTCAGA 38561 Score = 134 bits (148), Expect = 3e-26 Identities = 167/228 (73%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | ||||| |||||||| || || || || || || || || ||||||||| Sbjct 39697 AAAATGC---AGATTTTTGTGAAAACCCTGACTGGCAAGACTATTACACTGGAGGTGGAA 39641 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 | |||||||| || || ||||| ||||| |||||||||||||| || || || Sbjct 39640 CCCAGTGACACCATTGAAAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCACCC 39581 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 ||||| || || || |||||||| || |||||||| ||||| || | || || | || Sbjct 39580 GACCAACAGCGTCTGATCTTCGCTGGCAAACAGCTGGAAGAAGGCCGCACACTGTCAGAC 39521 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || |||| ||||| || || || ||||| || || | || ||| Sbjct 39520 TACAATATCCAGAAAGAGTCCACTCTTCATCTGGTGCTGCGTCTGAGA 39473 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || || || || ||||| || || |||||| | ||| Sbjct 39235 CAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACACTGGAAGTGGAACCCAGTGAC 39176 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| ||||| |||||||||||||| || || || |||||||| Sbjct 39175 ACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCACCCGACCAGCAG 39116 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || |||||||| || ||||| | || || | || || ||| || Sbjct 39115 CGTCTGATCTTTGCTGGTAAACAGCTAGAGGATGGCCGCACACTGTCAGACTACAACATC 39056 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || |||||||| || || ||||| || || | || ||| Sbjct 39055 CAGAAAGAATCTACTCTCCATCTGGTGCTGCGTCTGAGA 39017 Score = 122 bits (134), Expect = 2e-22 Identities = 153/207 (74%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || ||||| || ||||| || || ||| Sbjct 38551 CAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACACTTGAGGTAGA--GCCCAGTG 38494 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| || || || |||||||||||||| || || || ||||||| Sbjct 38493 ACACCATTGAGAACGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCCCCCGACCAGC 38434 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| || || || ||||| || ||||| | || || | || || ||| Sbjct 38433 AGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGCACACTGTCTGACTACAACA 38374 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 | || ||||| || |||||||| |||| Sbjct 38373 TTCAGAAAGAGTCCACACTGCA-CTTG 38348 >seq47 Length=5048387 Score = 116 bits (128), Expect = 9e-21 Identities = 161/225 (72%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || ||||| || | || || || || || ||||| || || ||| Sbjct 1632900 AAAATGC---AGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAA 1632844 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 |||||||| |||||||||||| ||||| |||||||||||||| || ||||| Sbjct 1632843 CCAAGTGACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCT 1632784 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || || || || ||||| || || || ||| | |||||||| | || || | || Sbjct 1632783 GATCAACAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTATCTGAC 1632724 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || ||| | || |||||||| ||| | || | || || ||||| Sbjct 1632723 TACAACATTCAGAAAGAATCCACATTACACTTGGTGCTGCGACTC 1632679 Score = 114 bits (126), Expect = 3e-20 Identities = 149/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | || || || || || ||||| || || ||| ||| Sbjct 1632438 CAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACCAAGTGAC 1632379 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||||||| ||||| |||||||||||||| || ||||| || || || Sbjct 1632378 ACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGATCAACAG 1632319 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||| | |||||||| | || || | || || ||| | Sbjct 1632318 CGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTATCTGACTACAACATT 1632259 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || |||||||| ||| | || |||| Sbjct 1632258 CAGAAAGAATCCACATTACA-CTTG 1632235 Score = 114 bits (126), Expect = 3e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | || || || || || ||||| || || ||| ||| Sbjct 1632666 CAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTTGAACCAAGTGAC 1632607 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||||||| ||||| |||||||||||||| || ||||| || || || Sbjct 1632606 ACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGATCAACAG 1632547 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||| | |||||||| | || || | || || ||| | Sbjct 1632546 CGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGAACACTATCTGACTACAACATT 1632487 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || |||||||| ||| | || | || || ||||| Sbjct 1632486 CAGAAAGAATCCACATTACACTTGGTGCTGCGACTC 1632451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203404174821576