Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callorhinchus_20milii_20[refseq_20GCF_5F000165045.1_202013-12-11] 21,204 sequences; 974,498,586 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq94 138 1e-27 seq47 84.2 2e-11 >seq94 Length=3237593 Score = 138 bits (152), Expect = 1e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| | ||||| ||||||| ||||| ||| |||||||| ||||| ||||| || Sbjct 38783 GCCGCCTCTCAGACGCAACACCAAGTGCAGTGTGGATTCCTTCTGGATGTTGTAGTCAGA 38842 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || ||||||||||| || || ||||| ||||| || || | ||| Sbjct 38843 CAGTGTGCGACCATCTTCAAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGATCTGGGGG 38902 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || ||||||||| |||||| |||| ||| | | ||||| || | || | Sbjct 38903 AATGCCTTCCTTGTCCTGGATTTTGGCCTTC-ACGTTTTCAATGGTGTCACTGGGTTCAA 38961 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| || || || || || |||| ||||| || |||||||||||| Sbjct 38962 CCTCCAATGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAAATCTGCATG 39011 Score = 132 bits (146), Expect = 4e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| ||| ||| ||||||||||| ||||| || || ||||| Sbjct 38337 AGACGCAGCACCAAGTGCAGTGTGGACTCTTTCTGAATGTTGTAGTCAGACAGTGTGCGA 38396 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| ||||| ||||| | ||||| || || Sbjct 38397 CCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGGGGAATGCCTTCT 38456 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| |||||| ||||| | | ||||| || | ||| ||||| | || Sbjct 38457 TTGTCCTGGATTTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCTACCTCAAGTGTG 38516 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| || || |||||||| Sbjct 38517 ATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 38554 Score = 132 bits (146), Expect = 4e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||| || ||| ||| ||||| ||||| ||||| || || ||||| Sbjct 39249 AGACGCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAAAGTGTGCGG 39308 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| ||||| |||||||||||||| || | || | | |||| Sbjct 39309 CCATCTTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCTGGTGGGATACCCTCC 39368 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| |||||| ||||| | | ||||| || | || ||||| | || Sbjct 39369 TTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCTACCTCAAGTGTG 39428 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || ||||| ||||| || || |||||||| Sbjct 39429 ATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 39466 Score = 120 bits (132), Expect = 3e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||||||| || ||| ||| ||||| || || ||||| || || ||||| Sbjct 39477 AGACGCAGCACCAGATGAAGAGTGGACTCTTTCTGGATATTGTAGTCTGACAGTGTGCGG 39536 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| ||||| ||||| ||||| ||||||||||| | |||| || || Sbjct 39537 CCTTCTTCCAGCTGTTTGCCAGCGAAGATCAGACGCTGTTGGTCGGGTGGAATGCCTTCT 39596 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||| | | ||||| || | |||||||||| || Sbjct 39597 TTGTCCTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACCTCCAGTGTA 39656 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||| || || || ||||||||||| || Sbjct 39657 ATAGTCTTGCCAGTCAGGGTTTTCACAAAAATCTGCATTTT 39697 Score = 116 bits (128), Expect = 3e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||||||||| ||| || ||||| ||||||||||| || ||||| || Sbjct 38565 AGACGCAGGACCAGATGCAGAGTGGATTCTTTCTGGATGTTATAGTCTGATAGGGTACGG 38624 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || ||||| |||||||| || | || | | ||| Sbjct 38625 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGTTGATCGGGTGGGATACCCTCT 38684 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||| | | ||||| || | ||||| |||| || Sbjct 38685 TTGTCCTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACTTCCAGTGTG 38744 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| || || || |||||||||||| Sbjct 38745 ATGGTCTTGCCAGTCAGGGTTTTGACAAAAATCTGCATG 38783 >seq47 Length=5048387 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || | ||| || ||||||||||| ||||| || Sbjct 1632215 CCACCACGGAGACGCAGCACCAAGTGTAATGTGGATTCTTTCTGAATGTTGTAGTCAGAT 1632274 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || | ||||||||| || || || || |||||||| || | ||| Sbjct 1632275 AGTGTTCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGTTGATCAGGAGGA 1632334 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814 | || || |||||| || | || |||| ||| | | ||||| || | || || Sbjct 1632335 ATGCCTTCTTTGTCC-TGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGTTCAAC 1632393 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || || |||| ||||| || || |||||||| Sbjct 1632394 TTCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1632441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462181466324800