Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq470 105 7e-18 >seq470 Length=1305644 Score = 105 bits (116), Expect = 7e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||| ||| ||||||||||||||||| |||||||| |||||| ||||||||||| Sbjct 601066 CCTCATCTCGGCTAATAAGTTCGTTAGAAAAGGTCAACCCAGGCATCAGTCCTCGTTTCT 601007 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||| | || || || ||||| || || || || || || | |||||| | Sbjct 601006 TCAGCCAGAATATAGAAGCAAATGAACCAGAGAAAAAGATCCCTTCTACAGCTGCAAATG 600947 Query 17106 C 17106 | Sbjct 600946 C 600946 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || ||||| || || || ||||||||||| || || |||||||||||||| || || Sbjct 593540 ATGTAGGTATCAATAAGAAGACTGTACATTTCTGAATGAATGTTCTCCATGGCAATTTGG 593481 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 || || || || || || ||||| | |||||| ||||| Sbjct 593480 AAACCATAGAAACAGCGTGCTTCTGTTATTTGCACTTC 593443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517397976586920