Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq889 102 1e-16 seq470 93.3 5e-14 >seq889 Length=882587 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| || || || |||||||| || |||||| || | || ||||| || ||||||| Sbjct 329167 TCCAGCCATAGAAGTGCATACTGGTGAGTTTGCCGTAGTTTGGCTCTGCAATGTGGATAT 329226 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| || || || || ||||||||||| || | ||| || |||||||| ||||| || | Sbjct 329227 TCAGGGACTGGCTCTGGTCGATGAAGGCACCGCGGTCAGCTGCCATTTTGATGATAGTTT 329286 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | | |||||| | ||||| || | ||| | ||| ||||||| Sbjct 329287 TCTGGGAGACTTCCCATACTGTTTTGTACAGCATCTTCAGATCCTCTGGAA 329337 Score = 84.2 bits (92), Expect = 3e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 54028 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTAT 54086 ||| || ||||| ||||||||||| ||||| || || ||| || || || | || ||| | Sbjct 339292 CACACGCTTCATGAAGAGATCAGGTATCCAGAGTGC-ATAGAAGAGGTCCCGGGCTCTCT 339350 Query 54087 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 54146 | ||||| || || |||||||| || || || | |||| | | | |||| | ||||| | Sbjct 339351 GCTCCTCCTTGCCAGTATTCTTCTTCAGGTCCAAGAACTCAAACACATCAAAGTGCCAGG 339410 Query 54147 GTTCCAAGTATATGG 54161 | |||| ||| |||| Sbjct 339411 GCTCCAGGTAGATGG 339425 Score = 82.4 bits (90), Expect = 9e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| || ||||| || || | || || || || ||||| || || || | Sbjct 357623 CACTGAAGACTTTCTTGGTTTCCTTATGCAAGTTGGAAACAGCAATTCTGGCAGCAAGGA 357682 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 |||| || || || || | ||| || ||||| || | || || | || ||||||| Sbjct 357683 TGGCGTAGTCTGGGTGCTTTGTTGTCAGTGTGGCGGCAGTCTCAGCAGCCAAGGTGTCCA 357742 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 54935 ||||||| || || || ||| | || | || ||||| |||||||||| Sbjct 357743 ATTCTACTGTGGTGACCCCACTGTACAAGCCCTGGATTACCTTCATAG 357790 >seq470 Length=1305644 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 24399 TTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATT 24458 |||| || |||||||| | |||||| |||||||| ||||||||||| || ||||| ||| Sbjct 593543 TTAATGTAGGTATCAATAAGAAGACTGTACATTTCTGAATGAATGTTCTCCATGGCAATT 593484 Query 24459 TGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 || || || |||||||| | || || || || || |||||| | |||||| || Sbjct 593483 TGGAAACCATAGAAACAGCGTGCTTCTGTTATTTGCACTTCTTGGCTAAATCGCTC 593428 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 || ||||| ||||||| || || || ||||||||||| ||||| | ||| || ||||| Sbjct 590503 ACCTCTTCAGCTGTCCAGAAGGAAGCTTCTGCCTTTTTGTACATCTGCCAAATATCATGG 590444 Query 24693 TATTGAATTGGAAAAATAACAAATC 24717 || || ||||||||||| ||||||| Sbjct 590443 TACTGGATTGGAAAAATGACAAATC 590419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593552248335120