Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq99 87.8 2e-12 seq134 84.2 3e-11 >seq99 Length=2558174 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/155 (73%), Gaps = 7/155 (5%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGA--GCTCCTAG 83448 |||| | |||||||||||||| |||||| | |||||| ||| | || | ||||| Sbjct 1892870 CCTGATATCCGAACTGGTTACAGGGGAACGCCAGCACTGTCAGGCGATGAGGGTACCTAG 1892811 Query 83449 GCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGC 83508 ||||||||| | || ||| | ||| |||| ||||| | ||||| |||||||| Sbjct 1892810 -----TCTGCAGCTCCTGCAGCTGGGAGTAATCCCTCACCGTCGTCCCTCAAAGGGACGC 1892756 Query 83509 TACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGA 83543 || |||||||| |||| ||||| || || |||| Sbjct 1892755 CACATTCTCGATCAGCACCACCCGCCCTCGAAAGA 1892721 >seq134 Length=2347075 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/132 (76%), Gaps = 4/132 (3%) Strand=Plus/Plus Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCT--CC 83445 || ||||||| || |||||||| || || || || || |||||||||||| || || | Sbjct 1778108 TTACCTGGTGGCCAAACTGGTTGCAGGGAAAGCCCAGAACTACCAGCCCCTGA-CTGGCG 1778166 Query 83446 TAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGA 83505 || || | || |||| ||||||||| ||||| |||| | || |||||||||| || Sbjct 1778167 TATTTGCTG-TGGAGCTGGTTCATCTGGGTGTAATCCCTGGTGGTTGTACCTCAGAGAGA 1778225 Query 83506 CGCTACGTTCTC 83517 ||| || ||||| Sbjct 1778226 CGCCACATTCTC 1778237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608623148322760