Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1120 109 6e-19 seq187 89.7 5e-13 >seq1120 Length=750286 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || ||||| || || || |||||||||||| | || || || || Sbjct 84574 AAGATGCAGATCTTTGTGAAAACTCTGACTGGTAAAACCATCACCCTTGAGGTGGAGCCC 84515 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | ||| | |||| || |||| || || || || ||||| | ||| Sbjct 84514 AGTGATACAATTGAAAATGTTAAGGCCAAGATTCAGGATAAGGAAGGAATCCCTCCTGAC 84455 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || || || || |||| || ||||| |||||||| || | ||||| || |||||| Sbjct 84454 CAACAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACTCTGTCTGACTAC 84395 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| ||||| ||| | || |||||| ||||| |||| Sbjct 84394 AACATTCAGAAAGAGTCAACCCTGCATTTAGTGCTGCG 84357 >seq187 Length=2081563 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 || || || || || || ||||| |||| || || ||| ||||| ||||| || ||| Sbjct 727392 GTAGCTTTTGCTGCTGTTGAGGGGATCTTTTTCTCTGGCTCCTTCGCTGCCATCTTCTGG 727333 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 || |||||||| | |||||||| |||||||||||| ||| ||||||||| ||||| Sbjct 727332 CTAAAGAAACGGGATCTCATGCCTGGCCTGACTTTCTCCAATGAGCTCATCAGTAGGGAT 727273 Query 117164 GA 117165 || Sbjct 727272 GA 727271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515072240163440