Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq1815 111 3e-19 >seq1815 Length=477142 Score = 111 bits (122), Expect = 3e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 51895 GCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATA 51954 || || |||| ||||||| | ||||| ||||| || ||| |||| || || || ||||| Sbjct 51698 GCCTTGTGGTGGTACTATGTCTCCAAGGGGATTGAGTACCTGGACACTGTGTTCTTCATC 51757 Query 51955 CTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTT 52014 || |||| ||||| || ||||| || || || || || ||||| || | || |||||| Sbjct 51758 CTGCGGAAGAAATTCAACCAGGTCAGCTTCCTCCATGTGTATCACCACTGCACCATGTTT 51817 Query 52015 ACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 ||||| | ||||| || ||||| ||| | || ||||| || Sbjct 51818 ACTCTCTGGTGGATTGGAATTAAGTGGGTGGCAGGAGGACA 51858 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || || |||||||| || | ||| |||| ||||| ||| |||||||| |||||||| Sbjct 52930 GCTTTCTTTGGAGCCCATATGAATGCTTTAATCCACGTTGTTATGTACTTGTATTATGGA 52989 Query 52117 ATGGCCGCTTGTGGTCCTATGTT-CAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 |||| |||||||| || ||| ||||| ||| || ||||||||||| ||| | || || Sbjct 52990 CTGGCTGCTTGTGGCCCACAGTTTCAGAA-GTACCTTTGGTGGAAACGGTATTTAACAAT 53048 Query 52176 AATGCAGTTGGTA 52188 | | ||| ||||| Sbjct 53049 ATTACAGCTGGTA 53061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922933469652760