Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq665 107 2e-18 seq263 104 3e-17 seq4120 96.9 4e-15 seq1120 96.9 4e-15 seq33 96.9 4e-15 seq616 93.3 5e-14 >seq665 Length=1067793 Score = 107 bits (118), Expect = 2e-18 Identities = 83/98 (85%), Gaps = 3/98 (3%) Strand=Plus/Plus Query 60054 ATGAAAAATTTT---CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 60110 || |||| |||| |||| |||| ||||||||||||| ||||||||||||||||||||| Sbjct 758339 ATAAAAACTTTTGGCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 758398 Query 60111 ACATACTCACCACTATACTACCGAGGATTGAATATATA 60148 ||||| ||||||||||||||||||| | | ||||| Sbjct 758399 GGATACTTACCACTATACTACCGAGGACTCACCATATA 758436 >seq263 Length=1776510 Score = 104 bits (114), Expect = 3e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 337397 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 337456 Query 60126 TACTACCGAGGATTGAATAT 60145 ||||| ||||||||| |||| Sbjct 337457 TACTAACGAGGATTGTATAT 337476 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 336023 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 336082 Query 60125 ATACTACCGAGGATTG 60140 |||||| ||||||||| Sbjct 336083 ATACTAACGAGGATTG 336098 Score = 100 bits (110), Expect = 3e-16 Identities = 75/88 (85%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 ||| ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| || Sbjct 335804 ATTATCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTAC 335745 Query 60121 CACTATACTACCGAGGATTGAATATATA 60148 |||||||||| |||||| | ||| ||| Sbjct 335744 CACTATACTAACGAGGAATACATACATA 335717 Score = 98.7 bits (108), Expect = 1e-15 Identities = 73/84 (87%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 60057 AAAAATTT-TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 ||||||| ||||| || | |||||| |||||| ||||||||||||||||||||| ||| Sbjct 1655594 AAAAATTCGTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1655535 Query 60116 CTCACCACTATACTACCGAGGATT 60139 || |||||||||||| |||||||| Sbjct 1655534 CTAACCACTATACTAACGAGGATT 1655511 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||| | |||||||| |||||| |||||||| |||||||||| ||||| ||||||| Sbjct 342132 CTCCTTGTCAGGGAATTGAACCCCGGTCTCCCACGTGACAGGCAAGGATACTTACCACTA 342191 Query 60126 TACTACCGAGGATT 60139 ||||| |||||||| Sbjct 342192 TACTAACGAGGATT 342205 >seq4120 Length=109457 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 50571 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 50512 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 50511 ATACTAACGAGGA 50499 >seq1120 Length=750286 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||| ||||||| || ||| || ||||| ||||| |||| |||||| || | Sbjct 84356 ACGCAGCACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAGAGTGCGTCC 84415 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| ||||| || || || ||||| ||||| | || | | ||||| Sbjct 84416 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGAGGGATTCCTTCCTT 84475 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACC-GTGTCGCTCGATTCCACATCGACCGTGA 43146 ||| ||| | || | | | | | || || || || | ||||| || | |||| Sbjct 84476 ATCC-TGAATCTTGGCCTTAACATTTTCAATTGTATCACTGGGCTCCACCTCAAGGGTGA 84534 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||||||| || || || || || |||||||| ||||| || Sbjct 84535 TGGTTTTACCAGTCAGAGTTTTCACAAAGATCTGCATCTT 84574 >seq33 Length=3581497 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 |||||||| | |||||| |||||| ||||||||||||||||||||| |||||| ||||| Sbjct 841169 TCTCCTCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCTCCACT 841110 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 841109 ATACTAACGAGGA 841097 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 |||||||||| | |||||| |||||| ||||||| ||||||||||| | |||||||||| Sbjct 722770 TTTCTCCTCGTCGGGGAATTGAACCCCGGTCTCCTGCGTGACAGGCAGGGATACTCACCA 722829 Query 60123 CTATACTACCGAGGA 60137 ||||| || |||||| Sbjct 722830 CTATATTAACGAGGA 722844 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 |||| || | |||||| |||||||||||||||||||||||||||| |||||| ||||| Sbjct 839844 TCTCTTCATCGGGGAATTGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTCTCCACT 839785 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 839784 ATACTAACGAGGA 839772 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || |||| |||| ||||| |||||||||| | ||||| || |||||||||| Sbjct 774992 TTCCTCCCCGTCAGGCAATCAAACCCCGGTCTCCCGCATCACAGGTGGGGATACTCACCA 774933 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 774932 CTATACTAACGAGGA 774918 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||||| |||||||| |||||||||||||||| ||||||||| | |||| | ||||| Sbjct 840035 TCTCCTCATCAGGGAATTGAACCCTGGTCTCCCGTGTGACAGGCAGGGATACACTCCACT 839976 Query 60125 ATACTACCGAGGA 60137 |||||| | |||| Sbjct 839975 ATACTAACAAGGA 839963 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||||| ||||||| | |||||| ||||||||| | |||||||| |||||| ||||| Sbjct 840225 TCTCCTCAGCAGGGATTTGAACCCCAGTCTCCCGCATAACAGGCGGGGATACTCTCCACT 840166 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 840165 ATACTAACGAGGA 840153 >seq616 Length=1115101 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 || |||||||| | |||||| |||||| ||||||||||||||||||||| |||||| | Sbjct 59986 TTATCTCCTCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCTTC 59927 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 59926 ACTATACTAACGAGGA 59911 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 || |||||| | | |||||| |||||| ||||||||||||||||||||| |||||| || Sbjct 68512 TTATCTCCTTGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCTCC 68453 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 68452 ACTATACTAACGAGGA 68437 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | ||||||||||||| |||||||||||||||||||| |||||| |||||| Sbjct 67 CTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGAGGATACTCTCCACTA 8 Query 60126 TACTA 60130 ||||| Sbjct 7 TACTA 3 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||||| | ||||||||||||| |||||||||||||||||||| |||||| | |||| Sbjct 272 CTCCTCAACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGAGGATACTCTCTACTA 213 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 212 TACTAACGAGGA 201 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 60067 TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTAT 60126 |||| | |||||||| |||||| |||||||| |||||||||||| |||||| ||||||| Sbjct 59801 TCCTTGTCAGGGAATTGAACCCCGGTCTCCCACGTGACAGGCGGGGATACTCTCCACTAT 59742 Query 60127 ACTACCGAGGA 60137 |||| ||||| Sbjct 59741 ACTAATGAGGA 59731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571654496177320