Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq16 334 5e-87 seq1954 141 6e-29 >seq16 Length=5018641 Score = 334 bits (370), Expect = 5e-87 Identities = 654/958 (68%), Gaps = 9/958 (1%) Strand=Plus/Minus Query 107668 AAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACT 107727 ||||||| || || ||||| |||| || ||||| | | || ||||| ||||| | Sbjct 2659322 AAAGGAAATTTATCGCATTCCCGTTGAGCAATGAAGAAGAACAATTTCCCATCGCCTATT 2659263 Query 107728 CGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCC 107787 | |||||||| || ||||| ||||||| |||||| ||||||| ||||| | || | | Sbjct 2659262 CTATGGTGGTACACGAGAATATTGAAATATTTGAAAGGCTGCTAAGAGCCATTTACACAC 2659203 Query 107788 CTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAG-AGGCG 107846 ||||||| ||||| ||||| |||||| || | || || ||||| || |||| Sbjct 2659202 CTCAGAATGCGTACTGCGTCCATGTGGATCAAAAAGCTCCCGA-ACTTTACCAGCAGGCT 2659144 Query 107847 GTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTG 107906 ||||||| |||| || ||||| |||||||| || |||||||| |||| ||| Sbjct 2659143 GTCAAGGGCATTGCATCTTGCTTTGAGAATGTCTTTATTGCCAGTAAATTGGAAAATGTG 2659084 Query 107907 GTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAG 107966 || ||||| ||| ||| |||||||| || ||||||||||||| || | ||| Sbjct 2659083 ACCTACGCCTCTTGGGTCAGGGTGCAAGCCGATTTGAACTGTATGGAGGATCTTCTCAGA 2659024 Query 107967 AGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACC 108026 ||| ||||| |||||||| | || || || |||||| | |||||||| |||||||| Sbjct 2659023 AGCAAAGTGCAGTGGAAGTATCTCCTCAACACCTGCGGGGCGGACTTCCCTATAAAGACT 2658964 Query 108027 AATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAG 108086 ||||| ||||| || ||| || | | || || |||||||| | || | ||| Sbjct 2658963 AATGCTGAGATTGTGAACAGCCTAAAAGTCCTAAATGGCAAGAACAGCTTAGAAACCGAG 2658904 Query 108087 GTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGA---CAGACACA 108143 | | || ||||||| |||||||| ||| || || |||| | || | Sbjct 2658903 AAGACGCCAGAACACAAAAAACTGCGCTGGAAGTACAGCCATATAGTGAAGGAAAACTCT 2658844 Query 108144 CTGTACCCTAC-CAGCAAGATGAAGGACCCTCCCCCTGATA-ATTTACCCATGTTCACAG 108201 ||||| || ||| || |||| ||| || || ||| ||||||||| | | Sbjct 2658843 GTGTACAGGACACAG-GAGCTGAAAAGCCCACCTCC-AATACGGAGCCCCATGTTCTCTG 2658786 Query 108202 GGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAAT 108261 ||||||| |||||||| | | ||| || ||||| ||| | || | |||| | Sbjct 2658785 GGAATGCTTATTTTGTAGTTACAAGAGAATTCGTCCAGCATCTGTTTAAGGACCCCGAGG 2658726 Query 108262 CCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCA 108321 || | || || || |||| ||||| ||||| ||||| || || || ||||||| Sbjct 2658725 TTCAGAAGCTTGTGGAGTGGGCAAAAGATACCTACAGCCCAGATGAGTTTCTTTGGGCCA 2658666 Query 108322 CCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCT 108381 || | ||||| || || | |||||||| |||| | || || || | || Sbjct 2658665 CCTTGCAGCGGATGCCTGGGGTACCTGGCTCCCTTCCATATGATGATAAATACCAAACCT 2658606 Query 108382 CAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCA 108441 |||||||| ||||| || || || || |||||| |||| || || ||| || || Sbjct 2658605 CAGACATGTTAGCCATTGCAAGACTTGTAAAGTGGAGCTACCTGGAAGGGGATATCGCCA 2658546 Query 108442 TGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGG 108501 ||||| |||||| | | |||| | || | ||| || || | ||| | ||||| | Sbjct 2658545 AAGGGGCTCCTTATCCCCTCTGCACAGGTACCCACCGACGGAGTACCTGTGTATACGGAG 2658486 Query 108502 CCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGA 108561 | || ||||| | ||||||||||| ||||| || || || ||||| ||||||||||| | Sbjct 2658485 CAGGAGACCTCAAATGGATTCTCCAAAACCACCATCTGTTAGCAAATAAGTTTGACCCAA 2658426 Query 108562 GGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTA 108619 | |||||||| | | | ||||| ||||||| ||||| | | ||| ||||||| Sbjct 2658425 GTGTGGATGACATTGCAATCCAGTGTCTAGAAGACTACCTTAGATACAAGTCCATCTA 2658368 >seq1954 Length=435601 Score = 141 bits (156), Expect = 6e-29 Identities = 571/885 (65%), Gaps = 27/885 (3%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || ||||||||||||||| || || || ||||| || || ||||| ||| | | Sbjct 242249 CCTCTGAGTAAAGAAGAGAGTGAGTTTCCAATTGCATATTCAATGGTAACTCATAAAAGT 242308 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || ||| |||||| | || || ||| |||| ||||| ||||||||| || || | Sbjct 242309 ATAGAACTGTTTGAAAGACTTCTACGATCCGTTTATGCACCTCAGAACTACTATTGCATT 242368 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || ||| |||||||| ||| | ||| || || ||| | | ||| || || Sbjct 242369 CATGTTGATAAAAAGTCCCCGGAGTCCTTCCTAGCTGCAGTCCAAGGAATTGCATCTTGT 242428 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || ||||| || || ||||| || | | ||||| |||||||| ||| ||| Sbjct 242429 TTTGAAAATGTTTTTATTGCCAGCCAGCTAGAGAGCGTGGTCTATGCCTCATGGAGCAGG 242488 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAG-AGCTCAGTGCCATGGAAGTA 107986 |||||||||||| ||||||||||| ||||| | | ||| | ||| | ||||| || Sbjct 242489 GTGCAAGCTGACTTGAACTGTATGAAAGACCT-TTACAGAAAGAGTGTGACTTGGAAATA 242547 Query 107987 CTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGC 108046 ||| | ||| || || | |||||||| || || ||||| ||||| || Sbjct 242548 CTTGATCAATCTCTGTGGTATGGACTTCCCTATCAAAACCAACTTTGAGATAGTGGAAAA 242607 Query 108047 CCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaa 108106 | ||| || ||||| | |||||| | || |||| | ||| ||| | Sbjct 242608 ATTGAAGGCCTTAAAGGGAGAAAACAGTCTTGAAACTGAAAAAATGCCTGCCAATAAAGA 242667 Query 108107 aaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATG-- 108164 || | |||||| || |||||| | | || || | || || || ||| Sbjct 242668 AAGAAGATGGAAAACCCACTATGAAATAATTGA-----TG-GTCATATCAAGAATATGGA 242721 Query 108165 -------AAGGACCCTCCCCCTGATAATTTACCC--ATGTTCACAGGGAATGCCTATTTT 108215 ||| |||||||||| |||| |||| || || |||| | ||| |||||| Sbjct 242722 AGTCAGTAAGAGCCCTCCCCCT-ATAA-AAACCCAGATATTTTCAGGCAGTGCTTATTTT 242779 Query 108216 GTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCT-AAATCCCAAAGACTGGT 108274 || | | | ||||| ||||| | | || | || |||||| | || | | Sbjct 242780 GTTGTTAGTAGGAAATTTGTTGAACATATACTTGAGGATTCTAAAATCCTAGAG-TTTAT 242838 Query 108275 TGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGC 108334 ||| |||| |||||||| |||||||| ||||| ||| |||||||| | || | Sbjct 242839 TGAGTGGGCAAAAGACACTTATAGCCCAGACGAGTTCCTGTGGGCCACATTACAAAGAAT 242898 Query 108335 TCCGTGGA-TGCCTGGCTCTGTTCCTAGCC-ACCCCAAGTATCACATCTCAGACATGACT 108392 ||| |||| | ||||||| ||||| |||| | ||||| | | | |||||||||| | Sbjct 242899 TCC-TGGAGTCCCTGGCTTCGTTCC-AGCCAATGGCAAGTTTGATGTGTCAGACATGAAT 242956 Query 108393 GCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCT 108452 ||| | || || || || || ||| | || || || || ||||| | || || || Sbjct 242957 GCCCTGGCTAGACTTGTGAAATGGTACTATCATGAAGGTGATGTGTCCGATGGAGCTCCA 243016 Query 108453 TATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTG 108512 ||| | || ||| || | ||| | | || || | | || || || ||| | Sbjct 243017 TATCCTCCATGCAGAGGTGTACATGTCCGCTCTATATGTGTATTTGGAGCTGGAGACTTA 243076 Query 108513 TACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 | ||||| || |||| |||||| | || || || || |||||| Sbjct 243077 AAATGGATGCTGAAGAAACATCACTTGTTTGCCAATAAATTTGAC 243121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348171944161206