Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq272 98.7 8e-16 >seq272 Length=1747054 Score = 98.7 bits (108), Expect = 8e-16 Identities = 112/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 20140 GAAAAAGGAGTTAAGATTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGA 20199 ||||| || || ||||| ||| || |||||||| ||||||||| ||| | || Sbjct 1527420 GAAAAGGGGGTCAAGATATGGGATGCCAATGGATCTCGGCAATTTTTGGACAAACAGGG- 1527478 Query 20200 TTTGACAACC-GTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTT 20258 ||| ||| || | | || || || |||||||| || ||||| || ||||||||||| || Sbjct 1527479 TTTAACATCCAGAGAGGAAGGAGACTTGGGTCCGGTTTATGGTTTCCAATGGAGACACTT 1527538 Query 20259 TGGAGCTGAATATGTTGACATGAACACA 20286 ||||||||||||| |||||| ||||| Sbjct 1527539 TGGAGCTGAATATAAAGACATGCACACA 1527566 Score = 86.0 bits (94), Expect = 5e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447 |||| | ||| |||||| | |||||||||||| || ||||| || || || | || Sbjct 1531208 AGATCTCCCTCAGATGGCTCTCCCTCCATGTCATGCACTCTGCCAGTTCTATGTATCAAA 1531267 Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507 | |||| |||| || || | || || | || | || ||||| ||||||| || || Sbjct 1531268 TGGTGAACTGTCTTGCCAGCTCTACCAGAGGTCGGGAGACATGGGGTTGGGTGTCCCCTT 1531327 Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAG 20557 ||||||||| ||||| | | ||||| || |||||||| || | |||| Sbjct 1531328 CAATATTGCTAGTTACTCTTTACTTACTTACATGATTGCTCACATCACAG 1531377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399072984309955