Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq889 105 6e-18 seq470 86.0 6e-12 >seq889 Length=882587 Score = 105 bits (116), Expect = 6e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 ||||||||| | | |||||||| |||| || || || || || |||||||| || || Sbjct 337215 CACCTCGTCCTGGCTGGTGTACTCGACAACCTCCGTGCACAGGTTACTACACTTGATGGT 337274 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| || ||||||||| || | ||||| | |||||||| | |||||| || || Sbjct 337275 GCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAAACCATGTAAGGGGT 337334 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 ||| ||||| ||| ||||||||||| || ||||| Sbjct 337335 GCCAGTCTCCGTCTGAGACTCGATGATGGCGTACCACA 337372 >seq470 Length=1305644 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 57524 AGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTA 57583 |||||| || ||| |||||||||| ||||| || | || | || |||||| | ||||| Sbjct 590405 AGAGAACCCACGTCGATTTGTCATTTTTCCAATCCAGTACCATGATATTTGGCAGATGTA 590464 Query 57584 CAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTA 57623 ||||||||||||||| || || ||||| | ||||| ||| Sbjct 590465 CAAAAAGGCAGAAGCTTCCTTCTGGACAGCTGAAGAGGTA 590504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445639250706480