Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq470 118 1e-21 >seq470 Length=1305644 Score = 118 bits (130), Expect = 1e-21 Identities = 101/125 (81%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||| || || ||||| |||||||| || || || ||||||| ||||||||| || Sbjct 601064 TCATCTCGGCTAATAAGTTCGTTAGAAAAGGTCAACCCAGGCATCAGTCCTCGTTTCTTC 601005 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||||| ||||||||||||||| || || || || || |||||||||||||| Sbjct 601004 AGCCAGAATATAGAAGCAAATGAACCAGAGAAAAAGATCCCTTCTACAGCTGCAAATGCC 600945 Query 11774 ACTAC 11778 || || Sbjct 600944 ACAAC 600940 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/94 (80%), Gaps = 7/94 (7%) Strand=Plus/Minus Query 11892 CTCTTACATATGTATCTATTAATAA----ACTATACATTTCTGAATGAATATTTTCCATA 11947 |||||| ||||| ||| ||||| ||| ||||||||||||||||| || ||||| Sbjct 593546 CTCTTA---ATGTAGGTATCAATAAGAAGACTGTACATTTCTGAATGAATGTTCTCCATG 593490 Query 11948 GCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 || ||||| || ||||||||||| ||||| |||| Sbjct 593489 GCAATTTGGAAACCATAGAAACAGCGTGCTTCTG 593456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468391159157360