Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq43 111 2e-19 seq889 102 1e-16 seq470 93.3 6e-14 >seq43 Length=3284880 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 || ||||||| |||||||||||||||||||||||| | ||||| ||||||||| ||||| Sbjct 63735 CCAGCTCCAAATTTACTGAAATCTCTCTTTGATTGGAATGTATAGGCAGTCAGACCAAGA 63676 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 |||||||||| || |||| ||||| || | ||| || || |||||||| || || Sbjct 63675 AACACTGCAGCCGTGAGCAGAAAAGCCTGGAGAACAACCGAAACTTCATAGAAGGTCAC 63617 Score = 105 bits (116), Expect = 9e-18 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287 || ||||| ||| | |||| | || ||| ||| |||| |||||| ||||| | |||| Sbjct 69296 TACTTCTTGTTAAACGCTTCGAGGAGGCGTAGCAGGTGCAGGAACAGGTTGATTACATCC 69237 Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347 ||||| | || || | |||||| | || |||||||| || ||||| || || || || Sbjct 69236 AAGTACAGGTTAATGGCGGCTAAGATGTACTCTTCAGGGGACAGCTTGTGCATCAGCAAG 69177 Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAA---AAGCAGACAGGACC 9404 || ||||| |||| ||||| || ||||| | ||| || || ||||| | || | Sbjct 69176 TGGGTGTCGAAGATGATGAAACCACAGAAGAGAAGAGCTCCGGCGGAAGCATA---GATC 69120 Query 9405 AGCTCCACTGTTTCA 9419 ||||||||||| ||| Sbjct 69119 AGCTCCACTGTCTCA 69105 >seq889 Length=882587 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| || || || |||||||| || |||||| || | || ||||| || ||||||| Sbjct 329167 TCCAGCCATAGAAGTGCATACTGGTGAGTTTGCCGTAGTTTGGCTCTGCAATGTGGATAT 329226 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| || || || || ||||||||||| || | ||| || |||||||| ||||| || | Sbjct 329227 TCAGGGACTGGCTCTGGTCGATGAAGGCACCGCGGTCAGCTGCCATTTTGATGATAGTTT 329286 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | | |||||| | ||||| || | ||| | ||| ||||||| Sbjct 329287 TCTGGGAGACTTCCCATACTGTTTTGTACAGCATCTTCAGATCCTCTGGAA 329337 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 65792 CTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 65851 ||| ||||| || ||||||||||||||||| || | || || || || ||||| |||| Sbjct 337245 CTCCGTGCACAGGTTACTACACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTT 337304 Query 65852 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 65911 || || ||||| |||| ||| | || || ||||| || ||||||| || || || || Sbjct 337305 GCAGGCGTCCTTGTAAACCATGTAAGGGGTGCCAGTCTCCGTCTGAGACTCGATGATGGC 337364 Query 65912 TTTCCA 65917 | ||| Sbjct 337365 GTACCA 337370 >seq470 Length=1305644 Score = 93.3 bits (102), Expect = 6e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 36422 TTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATT 36481 |||| || |||||||| | |||||| |||||||| ||||||||||| || ||||| ||| Sbjct 593543 TTAATGTAGGTATCAATAAGAAGACTGTACATTTCTGAATGAATGTTCTCCATGGCAATT 593484 Query 36482 TGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 || || || |||||||| | || || || || || |||||| | |||||| || Sbjct 593483 TGGAAACCATAGAAACAGCGTGCTTCTGTTATTTGCACTTCTTGGCTAAATCGCTC 593428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657985064435960