Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1120 120 3e-22 seq14380 89.7 5e-13 >seq1120 Length=750286 Score = 120 bits (132), Expect = 3e-22 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| ||||| || | || |||||||| |||||||| || || | Sbjct 84345 CCACCACGCAGACGCAGCACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 84404 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || | ||||| ||||| || |||||| |||||||||| || || || ||||| Sbjct 84405 AGAGTGCGTCCA-TCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGAGG 84463 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| || || ||| | || | ||| | | ||| | ||| || ||||||||| Sbjct 84464 GATTCCTTCCTTATCC-TGAATCTTGGCCTTAACATTTTCAATTGTATCACTGGGCTCCA 84522 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| ||| | || || || |||| ||||| || || || ||||| Sbjct 84523 CCTCAAGGGTGATGGTTTTACCAGTCAGAGTTTTCACAAAGATCTGCAT 84571 >seq14380 Length=3375 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || |||||| |||||||||| || || || ||||| || ||||| || Sbjct 28 TCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGAGGGATTCCTTCCTTA 87 Query 139670 TCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | ||| | | ||| | ||| || ||||||||||||||| || | Sbjct 88 TCC-TGAATCTTGGCCTTAACATTTTCAATTGTATCACTGGGCTCCACCTCAAGAGTGAT 146 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || |||| ||||| || || || ||||| Sbjct 147 GGTTTTACCAGTCAGAGTTTTCACAAAGATCTGCAT 182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495922503944800