Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq889 105 1e-17 seq470 87.8 3e-12 >seq889 Length=882587 Score = 105 bits (116), Expect = 1e-17 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| || ||||| |||||||| || |||||| || | || ||||| || ||||||| Sbjct 329167 TCCAGCCATAGAAGTGCATACTGGTGAGTTTGCCGTAGTTTGGCTCTGCAATGTGGATAT 329226 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| || || || || ||||||||||| || | ||| || |||||||| ||||| || | Sbjct 329227 TCAGGGACTGGCTCTGGTCGATGAAGGCACCGCGGTCAGCTGCCATTTTGATGATAGTTT 329286 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | | |||||| | ||||| || | ||| | ||| ||||||| Sbjct 329287 TCTGGGAGACTTCCCATACTGTTTTGTACAGCATCTTCAGATCCTCTGGAA 329337 Score = 96.9 bits (106), Expect = 5e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| || | ||| || |||||||| || | || || || || |||||||| || | | Sbjct 357623 CACTGAAGACTTTCTTGGTTTCCTTATGCAAGTTGGAAACAGCAATTCTGGCAGCAAGGA 357682 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 |||| || ||||| || | ||| || ||||| || | || || |||| ||||||| Sbjct 357683 TGGCGTAGTCTGGGTGCTTTGTTGTCAGTGTGGCGGCAGTCTCAGCAGCCAAGGTGTCCA 357742 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 80845 ||||||| || || || ||| | || | || ||||| |||||||||| Sbjct 357743 ATTCTACTGTGGTGACCCCACTGTACAAGCCCTGGATTACCTTCATAG 357790 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATG 79997 || || ||||| ||||||||||| ||||| || || ||| || || || | || ||| || Sbjct 339293 ACACGCTTCATGAAGAGATCAGGTATCCAGAGTGC-ATAGAAGAGGTCCCGGGCTCTCTG 339351 Query 79998 CTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 80057 |||||| || || |||||||| || || || | |||| | | | |||| | ||||| || Sbjct 339352 CTCCTCCTTGCCAGTATTCTTCTTCAGGTCCAAGAACTCAAACACATCAAAGTGCCAGGG 339411 Query 80058 TTCCAAGTATATGGC 80072 |||| ||| ||||| Sbjct 339412 CTCCAGGTAGATGGC 339426 >seq470 Length=1305644 Score = 87.8 bits (96), Expect = 3e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 50224 TTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATC 50283 |||| || ||||| || | |||||| |||||||| ||||||||||| || ||||| || Sbjct 593543 TTAATGTAGGTATCAATAAGAAGACTGTACATTTCTGAATGAATGTTCTCCATGGCAATT 593484 Query 50284 TGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339 || || || |||||||| | || || || || ||||||||| | |||||| || Sbjct 593483 TGGAAACCATAGAAACAGCGTGCTTCTGTTATTTGCACTTCTTGGCTAAATCGCTC 593428 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||| ||||| ||||||| || || || ||||||||||| ||||| | ||| || ||||| Sbjct 590504 TACCTCTTCAGCTGTCCAGAAGGAAGCTTCTGCCTTTTTGTACATCTGCCAAATATCATG 590445 Query 50517 ATATTGGATTGGGAAAATAACAAATC 50542 || |||||||| ||||| ||||||| Sbjct 590444 GTACTGGATTGGAAAAATGACAAATC 590419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718063922803160