Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1120 86.0 5e-12 >seq1120 Length=750286 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | ||| ||||| | || ||| || || | ||||| || ||| Sbjct 84345 CCACCACGCAGACGCAGCACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 84404 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| | || |||| || ||||| ||||| |||| |||||||| || | || Sbjct 84405 AGAGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGAGGG 84464 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || |||| || | || || | ||| ||| || | | ||| || Sbjct 84465 ATTCCTTCCTTATC-CTGAATCTTGGCCTTAACATTTTCAATTGTATCACTGGGCTCCAC 84523 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || ||||| || || |||||||||||||| || ||||| || Sbjct 84524 CTCAAGGGTGATGGTTTTACCAGTCAGAGTTTTCACAAAGATCTGCATCTT 84574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381263538611502