Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq889 105 9e-18 seq470 84.2 3e-11 >seq889 Length=882587 Score = 105 bits (116), Expect = 9e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| || || || |||||||| || |||||| ||| | || || || ||||| |||| Sbjct 329167 TCCAGCCATAGAAGTGCATACTGGTGAGTTTGCCGTAGTTTGGCTCTGCAATGTGGATAT 329226 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| ||||| || || ||||||||||| || | ||| || |||||||| ||||| || | Sbjct 329227 TCAGGGACTGGCTCTGGTCGATGAAGGCACCGCGGTCAGCTGCCATTTTGATGATAGTTT 329286 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | | |||||| | ||||| || | ||| | ||| ||||||| Sbjct 329287 TCTGGGAGACTTCCCATACTGTTTTGTACAGCATCTTCAGATCCTCTGGAA 329337 Score = 100 bits (110), Expect = 4e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | ||| || |||||||| || | || || || || |||||||| || || | Sbjct 357623 CACTGAAGACTTTCTTGGTTTCCTTATGCAAGTTGGAAACAGCAATTCTGGCAGCAAGGA 357682 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 |||| || ||||| || | ||| || ||||| || | || || |||| ||||||| Sbjct 357683 TGGCGTAGTCTGGGTGCTTTGTTGTCAGTGTGGCGGCAGTCTCAGCAGCCAAGGTGTCCA 357742 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 72928 ||||||| || || || ||| | || | || ||||| |||||||||| Sbjct 357743 ATTCTACTGTGGTGACCCCACTGTACAAGCCCTGGATTACCTTCATAG 357790 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATG 72080 || || ||||| ||||||||||| ||||| || || ||| || || || | || ||| || Sbjct 339293 ACACGCTTCATGAAGAGATCAGGTATCCAGAGTGC-ATAGAAGAGGTCCCGGGCTCTCTG 339351 Query 72081 CTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 |||||| || || |||||||| || || || | |||| | | | |||| | ||||| || Sbjct 339352 CTCCTCCTTGCCAGTATTCTTCTTCAGGTCCAAGAACTCAAACACATCAAAGTGCCAGGG 339411 Query 72141 TTCCAAGTATATGGC 72155 |||| ||| ||||| Sbjct 339412 CTCCAGGTAGATGGC 339426 >seq470 Length=1305644 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATG 42621 ||| ||||| | ||||| || || |||||||||||||| ||||| | ||| |||||||| Sbjct 590504 TACCTCTTCAGCTGTCCAGAAGGAAGCTTCTGCCTTTTTGTACATCTGCCAAATATCATG 590445 Query 42622 ATATTGAATTGGGAAAATAACAAATC 42647 || || ||||| ||||| ||||||| Sbjct 590444 GTACTGGATTGGAAAAATGACAAATC 590419 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 42329 TTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATC 42388 |||| || ||||| || | |||||| |||||||||||||||||||| || ||||| || Sbjct 593543 TTAATGTAGGTATCAATAAGAAGACTGTACATTTCTGAATGAATGTTCTCCATGGCAATT 593484 Query 42389 TGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || || || |||||||| | || || || | || |||||| | |||||| || Sbjct 593483 TGGAAACCATAGAAACAGCGTGCTTCTGTTATTTGCACTTCTTGGCTAAATCGCTC 593428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670947765932440