Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1120 187 6e-42 seq14380 165 2e-35 seq1815 122 2e-22 seq983 100 7e-16 seq470 89.7 1e-12 >seq1120 Length=750286 Score = 187 bits (206), Expect = 6e-42 Identities = 171/216 (79%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || |||| ||| | || || ||||||||||| || |||||||| ||||| | || ||| Sbjct 84360 AGCACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAGAGTGCGTCCATCT 84419 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || |||||||| || || | |||||| |||||||| |||||||| |||||| Sbjct 84420 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGAGGGATTCCTTCCTTATCC 84479 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || |||||||| | ||||| || || || ||||| || || || || Sbjct 84480 TGAATCTTGGCCTTAACATTTTCAATTGTATCACTGGGCTCCACCTCAAGGGTGATGGTT 84539 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 |||||||| || ||||| ||||| |||||||| ||| Sbjct 84540 TTACCAGTCAGAGTTTTCACAAAGATCTGCATCTTG 84575 >seq14380 Length=3375 Score = 165 bits (182), Expect = 2e-35 Identities = 148/186 (80%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 104378 ATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTC 104437 || || |||||||| ||||| | || ||||| || || || |||||||| || || | | Sbjct 1 ATGTTGTAGTCAGACAGAGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGC 60 Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 ||||| |||||||| |||||||| |||||||||||||| || || |||||||| | ||| Sbjct 61 TGTTGGTCAGGAGGGATTCCTTCCTTATCCTGAATCTTGGCCTTAACATTTTCAATTGTA 120 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 || || || || ||||| || || || || |||||||| || ||||| ||||| |||||| Sbjct 121 TCACTGGGCTCCACCTCAAGAGTGATGGTTTTACCAGTCAGAGTTTTCACAAAGATCTGC 180 Query 104558 ATTTTG 104563 || ||| Sbjct 181 ATCTTG 186 >seq1815 Length=477142 Score = 122 bits (134), Expect = 2e-22 Identities = 124/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || || |||||||| ||| |||| || || || || ||||| || ||| | ||||||||| Sbjct 51698 GCCTTGTGGTGGTACTATGTCTCCAAGGGGATTGAGTACCTGGACACTGTGTTCTTCATC 51757 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || || |||||||| || || | || || || ||||| ||||| || | || |||||| Sbjct 51758 CTGCGGAAGAAATTCAACCAGGTCAGCTTCCTCCATGTGTATCACCACTGCACCATGTTT 51817 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAA 78649 ||| | | ||||| || ||||| ||| | |||||||||||| Sbjct 51818 ACTCTCTGGTGGATTGGAATTAAGTGGGTGGCAGGAGGACAA 51859 >seq983 Length=821879 Score = 100 bits (110), Expect = 7e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| |||||||||||||| || || |||||||| | ||||| || || || ||||| Sbjct 334026 CCTTCCTTATCCTGAATCTTGGCCTTAACATTTTCAATTGTATCACTGGGCTCCACCTCA 334085 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || |||||||| || ||||| ||||| |||||||| ||| Sbjct 334086 AGAGTGATGGTTTTACCAGTCAGAGTTTTCACAAAGATCTGCATCTTG 334133 >seq470 Length=1305644 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || || ||||| ||||||||||| || || || || || || ||||| |||| || ||| Sbjct 600943 GTGGCATTTGCAGCTGTAGAAGGGATCTTTTTCTCTGGTTCATTTGCTTCTATATTCTGG 601002 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 |||||||| |||| || ||||| || || || || ||||||||| | || ||| | || Sbjct 601003 CTGAAGAAACGAGGACTGATGCCTGGGTTGACCTTTTCTAACGAACTTATTAGCCGAGAT 601062 Query 269258 GA 269259 || Sbjct 601063 GA 601064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151061767448852