Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1120 98.7 8e-16 >seq1120 Length=750286 Score = 98.7 bits (108), Expect = 8e-16 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | | ||||||||| || || ||| || ||||||||||| |||| Sbjct 84344 ACCACCACGCAGACGCAGCACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGA 84403 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || | || || | || ||||||||||| || | | || | |||||| || || | Sbjct 84404 CAGAGTG-CGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGAG 84462 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||| ||| ||| || ||| | | | || ||||| | | |||| Sbjct 84463 GGATTCCTTCCTTATCCTGAATCTTGGCCTTAACATTTTCAATTGTATCACTGGGCTCCA 84522 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||| | || ||||||||||| || |||||||||||||| ||||||||| || Sbjct 84523 CCTCAAGGGTGATGGTTTTACCAGTCAGAGTTTTCACAAAGATCTGCATCTTG 84575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421134047276819