Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq461 96.9 4e-15 >seq461 Length=1325495 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 164500 TTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACA 164559 ||||||||||||||| | || || || | || ||||||| || || || |||||||| Sbjct 388649 TTAGGCTGTAAACATGTGAAGGGTATCCTGTTGTATGGACCACCGGGATGTGGTAAAACC 388590 Query 164560 TTAATGGCTCGATGCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAAT 164616 | ||||||||| |||| | ||| | | ||| || || ||| ||| | |||||| Sbjct 388589 CTCATGGCTCGACAAATTGGT-AAGATGCTGAATGCACGGGAGCCG--AAAGTAGTTAAT 388533 Query 164617 GGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTT 164676 ||||||||| | || || || ||||| || ||||| || ||||| | | || ||||| Sbjct 388532 GGTCCTGAAATCTTAAATAAGTATGTGGGGGAGTCTGAGGCTAACATCCGCAAACTGTTT 388473 Query 164677 CAGGAGGCTGAAGAAGAACA 164696 || || || ||||| || Sbjct 388472 GCTGATGCAGAGGAAGAGCA 388453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595702034960400