Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq1985 145 1e-29 seq4361 89.7 7e-13 >seq1985 Length=426725 Score = 145 bits (160), Expect = 1e-29 Identities = 199/277 (72%), Gaps = 1/277 (0%) Strand=Plus/Minus Query 8698 CCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCC 8757 |||||| || |||||||| || || || | | ||| | || || ||| ||| || Sbjct 335191 CCCTTT-ACATTGCTACAAACAAGTTTTTGTAAGGAAGCAGTATTCACAATCTGAAAGCC 335133 Query 8758 CACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCAT 8817 ||| | ||||| ||||| || ||||||||||| | ||||||||||| || | || Sbjct 335132 CACATTCCCGCCAAAGGTACTTGGTTTCCAGTATTCAGGGGAGCAGATAGGATTTCCTAT 335073 Query 8818 GAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTT 8877 ||||| || | ||| || || || |||| || | ||| |||| || ||||| || Sbjct 335072 CAGGCCCTTCAAGGAGAATGGGGCACCCATTTCTACCATGGTCTCTCCAAAGATAGCACC 335013 Query 8878 GGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTA 8937 || || ||||| || |||| || |||| ||| | ||||||||| || | ||||||||| Sbjct 335012 AGGGCGAGGCTTCTCTACCATTAAGCCGGGGTATAGCTCCACAGCGTCTACGTCTCCGTA 334953 Query 8938 AAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 ||| | |||||| ||||| |||||||| |||||| Sbjct 334952 AAGTTCTTGGAGTTCTGCAGCCATTTCCTTCTCTCCT 334916 Score = 123 bits (136), Expect = 4e-23 Identities = 174/242 (72%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 || |||| ||| ||||| ||||| |||| ||| ||||||||||||||| | || ||| Sbjct 330973 ATCAGTCTAGTTGTCTGGAACAGACGTTCATCATCCCATTCTGGATGTTCCTGCTTAAGA 330914 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || ||||||||||| ||||| |||||||| | |||||||| || ||||| Sbjct 330913 ATGTCACAAACTCTGTTGTGCTCCCTAAGCCAGATTACTGAATACATCATTAGTCCAGGG 330854 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATA-TTTTCGGGCACTTCGGGAGG 9800 || |||||||| | || || || |||| || || | | | || | | | |||||| Sbjct 330853 ACGAGGCCAAAGACTTCCTGGCCCACAG-CAAACTTAAAGTCCTCTGCAATGTGGGGAGG 330795 Query 9801 ATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAAT 9860 || ||||| || ||||||||||| || | || || ||||| || || | || || Sbjct 330794 GTAAGTCATGGCTACTTGGACATCTTTAACAGTAGGAGGGTACATCTCTCCATTGATCAT 330735 Query 9861 CT 9862 || Sbjct 330734 CT 330733 >seq4361 Length=92844 Score = 89.7 bits (98), Expect = 7e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 |||| ||| |||| || | ||| || || ||||| ||||||||||| | ||||| Sbjct 16034 TTGATGATGTCAAATCCTGTTTTTCCCCCAAAAGTGCTAGGTTTCCAGTATTCAGGGGAA 16093 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 ||||| ||| ||| |||||||| || ||||| ||||| |||| || | ||||| Sbjct 16094 CAGATAGGGTTGCCCAGAAGGCCTTTAAGTGAAAAGGGAGCTCCCATTTCCACCATGCTT 16153 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || || |||||| ||| || ||||||| || || | | || || |||| | Sbjct 16154 TCTCCAAAGATGTTACCAGGATAAGGTTTTTCCAGCAGCAAGGCAGGATAAAATTCCATA 16213 Query 8921 GCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || || || ||||| || ||| | ||||| || || || || | |||||| Sbjct 16214 GCATCAATATCTCCATACAGGTTCTCAAGTTCAGCTGCCATCTCTTCCTCTCCT 16267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708322702157360