Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latimeria_20chalumnae_20[refseq_20GCF_5F000225785.1_202011-09-12] 22,819 sequences; 2,860,591,921 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq889 102 1e-16 seq470 86.0 8e-12 >seq889 Length=882587 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| || || || |||||||| || |||||| || | || ||||| || ||||||| Sbjct 329167 TCCAGCCATAGAAGTGCATACTGGTGAGTTTGCCGTAGTTTGGCTCTGCAATGTGGATAT 329226 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| || || || || ||||||||||| || | ||| || |||||||| ||||| || | Sbjct 329227 TCAGGGACTGGCTCTGGTCGATGAAGGCACCGCGGTCAGCTGCCATTTTGATGATAGTTT 329286 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 | || | | |||||| | ||||| || | ||| | ||| ||||||| Sbjct 329287 TCTGGGAGACTTCCCATACTGTTTTGTACAGCATCTTCAGATCCTCTGGAA 329337 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| || | ||| || |||||||| || | || || || || |||||||| || || | Sbjct 357623 CACTGAAGACTTTCTTGGTTTCCTTATGCAAGTTGGAAACAGCAATTCTGGCAGCAAGGA 357682 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 |||| || || || || | ||| || ||||| || | || || |||| ||||||| Sbjct 357683 TGGCGTAGTCTGGGTGCTTTGTTGTCAGTGTGGCGGCAGTCTCAGCAGCCAAGGTGTCCA 357742 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAG 64122 ||||||| || || || ||| | || | || || || |||||||||| Sbjct 357743 ATTCTACTGTGGTGACCCCACTGTACAAGCCCTGGATTACCTTCATAG 357790 Score = 86.0 bits (94), Expect = 8e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 63215 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTAT 63273 ||| || ||||| ||||||||||| ||||| || || ||| || || || | || ||| | Sbjct 339292 CACACGCTTCATGAAGAGATCAGGTATCCAGAGTGC-ATAGAAGAGGTCCCGGGCTCTCT 339350 Query 63274 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 63333 | ||||| || || |||||||| || || || | |||| | | | |||| | ||||| | Sbjct 339351 GCTCCTCCTTGCCAGTATTCTTCTTCAGGTCCAAGAACTCAAACACATCAAAGTGCCAGG 339410 Query 63334 GTTCCAAGTATATGGC 63349 | |||| ||| ||||| Sbjct 339411 GCTCCAGGTAGATGGC 339426 >seq470 Length=1305644 Score = 86.0 bits (94), Expect = 8e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 33568 TTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATC 33627 |||| || ||||| || | |||||| |||||||| ||||||||||| || ||||| || Sbjct 593543 TTAATGTAGGTATCAATAAGAAGACTGTACATTTCTGAATGAATGTTCTCCATGGCAATT 593484 Query 33628 TGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCC 33687 || || || |||||||| | || || || || || |||||| | |||||| ||| || Sbjct 593483 TGGAAACCATAGAAACAGCGTGCTTCTGTTATTTGCACTTCTTGGCTAAATCGCTCCACC 593424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622769512098040